5I08
Prefusion structure of a human coronavirus spike protein
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Coronavirus S1 glycoprotein domain C-like | 8092672 | 4007778 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Coronavirus S1 glycoprotein domain D-like | 8092674 | 4007779 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Coronavirus spike S1 glycoprotein N-terminal domain-like | 8045607 | 4004563 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Coronavirus S2 glycoprotein stalk-like | 8091057 | 4003119 | SCOP2 (2022-06-29) |
A | SCOP2 Family | SARS coronavirus receptor-binding domain-like | 8091055 | 4003874 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Coronavirus S1 glycoprotein domain C-like | 8092673 | 3002615 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Coronavirus S1 glycoprotein domain D-like | 8092675 | 3002616 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Concanavalin A-like lectins/glucanases | 8091054 | 3000120 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Coronavirus S2 glycoprotein stalk-like | 8091058 | 3000282 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | SARS coronavirus receptor-binding domain-like | 8091056 | 3001706 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain C-like | 8092673 | 3002615 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8091054 | 3000120 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Coronavirus S2 glycoprotein stalk-like | 8091058 | 3000282 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Coronavirus S2 glycoprotein stalk-like | 8091058 | 3000282 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8091054 | 3000120 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain C-like | 8092673 | 3002615 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF16451 | e5i08A2 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF16451 | ECOD (1.6) |
A | PF19209 | e5i08A4 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: PF19209 | ECOD (1.6) |
A | PF09408 | e5i08A3 | A: a+b three layers | X: Coronavirus spike protein receptor-binding domain (From Homology) | H: Coronavirus spike protein receptor-binding domain | T: Beta-coronavirus spike protein receptor-binding domain | F: PF09408 | ECOD (1.6) |
A | PF01601 | e5i08A1 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: PF01601 | ECOD (1.6) |
B | PF16451 | e5i08B2 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF16451 | ECOD (1.6) |
B | PF19209 | e5i08B4 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: PF19209 | ECOD (1.6) |
B | PF09408 | e5i08B3 | A: a+b three layers | X: Coronavirus spike protein receptor-binding domain (From Homology) | H: Coronavirus spike protein receptor-binding domain | T: Beta-coronavirus spike protein receptor-binding domain | F: PF09408 | ECOD (1.6) |
B | PF01601 | e5i08B1 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: PF01601 | ECOD (1.6) |
C | PF16451 | e5i08C2 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF16451 | ECOD (1.6) |
C | PF19209 | e5i08C4 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: PF19209 | ECOD (1.6) |
C | PF09408 | e5i08C3 | A: a+b three layers | X: Coronavirus spike protein receptor-binding domain (From Homology) | H: Coronavirus spike protein receptor-binding domain | T: Beta-coronavirus spike protein receptor-binding domain | F: PF09408 | ECOD (1.6) |
C | PF01601 | e5i08C1 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: PF01601 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16451 | Betacoronavirus-like spike glycoprotein S1, N-terminal (bCoV_S1_N) | Betacoronavirus-like spike glycoprotein S1, N-terminal | This entry represents the N-terminal domain of the betacoronavirus-like trimeric spike glycoprotein. The distal S1 subunit of the coronavirus spike protein is responsible for receptor binding. S1 contains two domains; an N-terminal galectin-like doma ... | Domain | |
PF19209 | Coronavirus spike glycoprotein S1, C-terminal (CoV_S1_C) | Coronavirus spike glycoprotein S1, C-terminal | This entry represents a domain found at the C-terminus of the Coronavirus S1 protein. It is found across a range of alpha, beta and gamma coronaviruses. This small all beta stranded domain is known as subdomain 2 in the structure of the porcine epide ... | Domain |