5HVF
Crystal Structure of Thrombin-activatable Fibrinolysis Inhibitor in Complex with an Inhibitory Nanobody (VHH-i83)
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d5hvfb1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | Alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
B | d5hvfb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Propep_M14 | e5hvfA2 | A: a+b two layers | X: Alpha-beta plaits | H: Protease propeptides/inhibitors (From Topology) | T: Protease propeptides/inhibitors | F: Propep_M14 | ECOD (1.6) |
A | Peptidase_M14 | e5hvfA1 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Zn-dependent exopeptidases (From Topology) | T: Zn-dependent exopeptidases | F: Peptidase_M14 | ECOD (1.6) |
B | V-set_1 | e5hvfB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.340 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Metallocarboxypeptidase-like | CATH (4.3.0) |
A | 3.40.630.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aminopeptidase | Zn peptidases | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
VHH-i83 | VH | Vicugna pacos (alpaca) | IGHV3S53*01, IGHJ4*01 | V-DOMAIN VH | IG | (VH) | IMGT (202445-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | carboxypeptidase b2 | SAbDab (2024-11-15) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02244 | Carboxypeptidase activation peptide (Propep_M14) | Carboxypeptidase activation peptide | Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase, and is responsible for modulation of folding and activity of the pro- ... | Domain | |
PF00246 | Zinc carboxypeptidase (Peptidase_M14) | Zinc carboxypeptidase | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036990 | Metallocarboxypeptidase-like, propeptide | Homologous Superfamily | |
IPR033849 | Carboxypeptidase B2 | Domain | |
IPR003146 | Carboxypeptidase, activation peptide | Domain | |
IPR000834 | Peptidase M14, carboxypeptidase A | Domain |