5HJ3
Crystal structure of host-primed Ebola virus GP, GPcl.
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | Filo_glycop | e5hj3C1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: Filo_glycop | ECOD (1.6) |
E [auth G] | Filo_glycop | e5hj3G1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: Filo_glycop | ECOD (1.6) |
I [auth K] | Filo_glycop | e5hj3K1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: Filo_glycop | ECOD (1.6) |
M [auth O] | Filo_glycop | e5hj3O1 | A: a+b complex topology | X: Envelope glycoprotein GP1 (From Topology) | H: Envelope glycoprotein GP1 (From Topology) | T: Envelope glycoprotein GP1 | F: Filo_glycop | ECOD (1.6) |
B [auth D] | Ebola-like_HR1-HR2 | e5hj3D1 | A: a+b duplicates or obligate multimers | X: Envelope glycoprotein GP2-related (From Topology) | H: Envelope glycoprotein GP2-related (From Topology) | T: Envelope glycoprotein GP2-related | F: Ebola-like_HR1-HR2 | ECOD (1.6) |
F [auth H] | Ebola-like_HR1-HR2 | e5hj3H1 | A: a+b duplicates or obligate multimers | X: Envelope glycoprotein GP2-related (From Topology) | H: Envelope glycoprotein GP2-related (From Topology) | T: Envelope glycoprotein GP2-related | F: Ebola-like_HR1-HR2 | ECOD (1.6) |
J [auth L] | Ebola-like_HR1-HR2 | e5hj3L1 | A: a+b duplicates or obligate multimers | X: Envelope glycoprotein GP2-related (From Topology) | H: Envelope glycoprotein GP2-related (From Topology) | T: Envelope glycoprotein GP2-related | F: Ebola-like_HR1-HR2 | ECOD (1.6) |
N [auth P] | Ebola-like_HR1-HR2 | e5hj3P1 | A: a+b duplicates or obligate multimers | X: Envelope glycoprotein GP2-related (From Topology) | H: Envelope glycoprotein GP2-related (From Topology) | T: Envelope glycoprotein GP2-related | F: Ebola-like_HR1-HR2 | ECOD (1.6) |
C [auth E] | C1-set_1 | e5hj3E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C [auth E] | V-set_12 | e5hj3E2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
G [auth I] | C1-set_1 | e5hj3I2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
G [auth I] | V-set_12 | e5hj3I1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
K [auth M] | C1-set_1 | e5hj3M1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
K [auth M] | V-set_12 | e5hj3M2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
O [auth A] | C1-set_1 | e5hj3A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
O [auth A] | V-set_12 | e5hj3A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
D [auth F] | C1-set_4 | e5hj3F2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
D [auth F] | V-set | e5hj3F1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
H [auth J] | C1-set_4 | e5hj3J1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
H [auth J] | V-set | e5hj3J2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
L [auth N] | C1-set_4 | e5hj3N2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
L [auth N] | V-set | e5hj3N1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
P [auth B] | C1-set_4 | e5hj3B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
P [auth B] | V-set | e5hj3B2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth E] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
G [auth I] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
K [auth M] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
O [auth A] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D [auth F] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
H [auth J] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
L [auth N] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
P [auth B] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C [auth E], G [auth I], K [auth M], O [auth A] | Fab KZ52, broadly neutralizing antibody | VH-CH1 | Homo sapiens (human) | IGHV3-21*01, IGHV3-21*02, IGHV3-21*04, IGHV3-21*03, IGHJ3*02, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202438-0) |
D [auth F], H [auth J], L [auth N], P [auth B] | Fab KZ52, broadly neutralizing antibody | L-KAPPA | Homo sapiens (human) | IGKV4-1*01, IGKJ4*01, IGKJ4*02, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202438-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth E], G [auth I], K [auth M], O [auth A] | Heavy Chain | IGHV3 | - | envelope glycoprotein | envelope glycoprotein | SAbDab (2024-09-27) |
D [auth F], H [auth J], L [auth N], P [auth B] | Light Chain | IGKV4 | Kappa | envelope glycoprotein | envelope glycoprotein | SAbDab (2024-09-27) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], E [auth G], I [auth K], M [auth O] | PF01611 | Filovirus glycoprotein (Filo_glycop) | Filovirus glycoprotein | - | Family |
B [auth D], F [auth H], J [auth L], N [auth P] | PF22307 | Envelope glycoprotein GP2-like, HR1-HR2 (Ebola-like_HR1-HR2) | Envelope glycoprotein GP2-like, HR1-HR2 | This entry spans heptad repeats 1 and 2 of the glycoprotein (GP) from Ebola and Marburg viruses [1-5]. Viral infection involves the formation of a trimer-of-hairpins structure (three HR1s helices, buttressed by three HR2 helices lying in antiparallel ... | Domain |