5E7F
Complex between lactococcal phage Tuc2009 RBP head domain and a nanobody (L06)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | V-set_8 | e5e7fA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B | V-set_8 | e5e7fB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C | V-set_8 | e5e7fC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
E [auth H] | EUF07677 | e5e7fH1 | A: beta sandwiches | X: jelly-roll | H: Major structural protein 1 jelly-roll domain (From Topology) | T: Major structural protein 1 jelly-roll domain | F: EUF07677 | ECOD (1.6) |
D [auth G] | EUF07677 | e5e7fG1 | A: beta sandwiches | X: jelly-roll | H: Major structural protein 1 jelly-roll domain (From Topology) | T: Major structural protein 1 jelly-roll domain | F: EUF07677 | ECOD (1.6) |
F [auth I] | EUF07677 | e5e7fI1 | A: beta sandwiches | X: jelly-roll | H: Major structural protein 1 jelly-roll domain (From Topology) | T: Major structural protein 1 jelly-roll domain | F: EUF07677 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | major structural protein 1 | SAbDab (2024-10-25) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
D [auth G], E [auth H], F [auth I] | PF21454 | Major structural protein 1, jelly-roll domain (MSP1_barrel) | Major structural protein 1, jelly-roll domain | This entry represents a beta barrel domain found towards the N-terminal of phage Tuc2009 receptor binding protein (RBP) which forms the head domain, involved in carbohydrate recognition [1]. | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
D [auth G], E [auth H], F [auth I] | IPR040956 | Lower baseplate protein, N-terminal | Domain |
D [auth G], E [auth H], F [auth I] | IPR049005 | Major structural protein 1, jelly-roll domain | Domain |