5DNY
Structure of the ATPrS-Mre11/Rad50-DNA complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF08178 | e5dnyA3 | A: alpha bundles | X: Rad50-binding domain of Mre11 (From Topology) | H: Rad50-binding domain of Mre11 (From Topology) | T: Rad50-binding domain of Mre11 | F: EUF08178 | ECOD (1.6) |
A | Metallophos_2_1 | e5dnyA2 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: Metallophos_2_1 | ECOD (1.6) |
A | UNK_F_TYPE | e5dnyA1 | A: a+b four layers | X: Mre11 nuclease C-terminal domain (From Topology) | H: Mre11 nuclease C-terminal domain (From Topology) | T: Mre11 nuclease C-terminal domain | F: UNK_F_TYPE | ECOD (1.6) |
C | EUF08178 | e5dnyC1 | A: alpha bundles | X: Rad50-binding domain of Mre11 (From Topology) | H: Rad50-binding domain of Mre11 (From Topology) | T: Rad50-binding domain of Mre11 | F: EUF08178 | ECOD (1.6) |
C | Metallophos_2_1 | e5dnyC3 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: Metallophos_2_1 | ECOD (1.6) |
C | UNK_F_TYPE | e5dnyC2 | A: a+b four layers | X: Mre11 nuclease C-terminal domain (From Topology) | H: Mre11 nuclease C-terminal domain (From Topology) | T: Mre11 nuclease C-terminal domain | F: UNK_F_TYPE | ECOD (1.6) |
B | SMC_N_1 | e5dnyB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: SMC_N_1 | ECOD (1.6) |
D | SMC_N_1 | e5dnyD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: SMC_N_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.60.21.10 | Alpha Beta | 4-Layer Sandwich | Purple Acid Phosphatase | chain A, domain 2 | CATH (4.3.0) |
A | 3.30.160.600 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) | |
A | 6.10.10.50 | Special | Helix non-globular | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
C | 3.60.21.10 | Alpha Beta | 4-Layer Sandwich | Purple Acid Phosphatase | chain A, domain 2 | CATH (4.3.0) |
C | 3.30.160.600 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | CATH (4.3.0) | |
C | 6.10.10.50 | Special | Helix non-globular | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
D | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00149 | Calcineurin-like phosphoesterase (Metallophos) | Calcineurin-like phosphoesterase | This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or ... | Domain | |
PF22226 | Mre11 C-terminal Rad50-binding domain (Mre11_C) | Mre11 C-terminal Rad50-binding domain | Communication between Mre11 and Rad50 in the MR complex is critical for the sensing, damage signaling, and repair of DNA double-strand breaks. Mre11 protein consists of an N-terminal core domain and a C-terminal domain linked by an extended connectin ... | Domain | |
PF13476 | AAA domain (AAA_23) | AAA domain | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004843 | Calcineurin-like phosphoesterase domain, ApaH type | Domain | |
IPR029052 | Metallo-dependent phosphatase-like | Homologous Superfamily | |
IPR032885 | DNA double-strand break repair protein Mre11, archaea-type | Family | |
IPR050535 | DNA Repair and Maintenance Complex Component | Family | |
IPR041796 | Mre11 nuclease, N-terminal metallophosphatase domain | Domain | |
IPR022982 | DNA double-strand break repair Rad50 ATPase, archaeal type | Family | |
IPR013134 | RAD50, zinc hook | Domain | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR038729 | Rad50/SbcC-type AAA domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |