5BKN
Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
BA [auth GG] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
CA [auth HH] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
DA [auth II] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
EA [auth JJ] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
FA [auth KK] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
BA [auth GG] | EUF07641 | e5bknGG1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
A | EUF07641 | e5bknA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
B | EUF07641 | e5bknB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
C | EUF07641 | e5bknC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
CA [auth HH] | EUF07641 | e5bknHH1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
D | EUF07641 | e5bknD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
DA [auth II] | EUF07641 | e5bknII1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
E | EUF07641 | e5bknE1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
EA [auth JJ] | EUF07641 | e5bknJJ1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
F | EUF07641 | e5bknF1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
FA [auth KK] | EUF07641 | e5bknKK1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
G | EUF07641 | e5bknG1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
H | EUF07641 | e5bknH1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
I | EUF07641 | e5bknI1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
J | EUF07641 | e5bknJ1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
K | EUF07641 | e5bknK1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
L | EUF07641 | e5bknL1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
M | EUF07641 | e5bknM1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
N | EUF07641 | e5bknN1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
O | EUF07641 | e5bknO1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: EUF07641 | ECOD (1.6) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Coat protein | - | |||
P, Q [auth S], V [auth a] | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | - | - | - |
R [auth T] | RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3') | - | - | - |
S [auth V] | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | - | - | - |
GA [auth TT], HA [auth UU], T [auth X], U [auth Y] | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | - | - | - |
MA [auth qq], W [auth e] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
X [auth h] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
LA [auth ll], Y [auth i] | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | - | - | - |
IA [auth WW], KA [auth kk], Z [auth m] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
AA [auth n] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
JA [auth bb] | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037164 | Satellite virus coat domain superfamily | Homologous Superfamily |