Annotations: 4WCW

Ribosomal silencing factor during starvation or stationary phase (RsfS) from Mycobacterium tuberculosis

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Nucleotidyltransferase-like	8086761	3000129	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nucleotidyltransferase-like	8086761	3000129	SCOP2B (2022-06-29)
B	SCOP2 Family	Iojap/YbeB-like	8086760	4001878	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Nucleotidyltransferase-like	8086761	3000129	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Nucleotidyltransferase-like	8086761	3000129	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	AIDA	e4wcwD1	A: beta barrels	X: Mitochondrial mTERF-like	H: Transcription activator-like effector (TALE)	T: Transcription activator-like effector (TALE)	F: AIDA	ECOD (v294.2)
C	AIDA	e4wcwC1	A: beta barrels	X: Mitochondrial mTERF-like	H: Transcription activator-like effector (TALE)	T: Transcription activator-like effector (TALE)	F: AIDA	ECOD (v294.2)
B	AIDA	e4wcwB1	A: beta barrels	X: Mitochondrial mTERF-like	H: Transcription activator-like effector (TALE)	T: Transcription activator-like effector (TALE)	F: AIDA	ECOD (v294.2)
A	AIDA	e4wcwA1	A: beta barrels	X: Mitochondrial mTERF-like	H: Transcription activator-like effector (TALE)	T: Transcription activator-like effector (TALE)	F: AIDA	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.460.10	Alpha Beta	2-Layer Sandwich	Beta Polymerase	domain 2	CATH (4.3.0)
C	3.30.460.10	Alpha Beta	2-Layer Sandwich	Beta Polymerase	domain 2	CATH (4.3.0)
B	3.30.460.10	Alpha Beta	2-Layer Sandwich	Beta Polymerase	domain 2	CATH (4.3.0)
A	3.30.460.10	Alpha Beta	2-Layer Sandwich	Beta Polymerase	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02410	Ribosomal silencing factor during starvation (RsfS)	Ribosomal silencing factor during starvation	This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal su ...	This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits [1]. This family is structurally homologous to nucleotidyltransferases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Ribosomal silencing factor RsfS	ribonucleoprotein complex binding protein-containing complex binding binding ribosomal large subunit binding ribosome binding cation binding ion binding metal ion binding small molecule binding identical protein binding protein binding	regulation of biological process ribonucleoprotein complex biogenesis regulation of cellular process biological regulation negative regulation of biological process regulation of ribosome biogenesis regulation of cellular component biogenesis cellular component biogenesis ribosome biogenesis negative regulation of cellular process negative regulation of ribosome biogenesis cellular process cellular component organization or biogenesis protein biosynthetic process regulation of biological process ribonucleoprotein complex biogenesis regulation of cellular process biological regulation negative regulation of biological process regulation of ribosome biogenesis regulation of cellular component biogenesis cellular component biogenesis ribosome biogenesis negative regulation of cellular process negative regulation of ribosome biogenesis cellular process cellular component organization or biogenesis protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of protein metabolic process negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process organelle assembly membraneless organelle assembly cellular component organization organelle organization cellular component assembly cytosolic ribosome assembly ribosome assembly	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR043519	Nucleotidyltransferase superfamily	Homologous Superfamily
A, B, C, D	IPR004394	Protein Iojap/ribosomal silencing factor RsfS	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.