Annotations: 4RDM

Crystal structure of R.NgoAVII restriction endonuclease B3 domain with cognate DNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	DNA-binding pseudobarrel domain	8056986	3000213	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	DNA-binding pseudobarrel domain	8056986	3000213	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Internalin_N	e4rdmB1	A: beta barrels	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v294.2)
A	Internalin_N	e4rdmA1	A: beta barrels	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF20731	NgoFVII C-terminal B3-like DNA-binding domain (RE_NgoFVII_C)	NgoFVII C-terminal B3-like DNA-binding domain	This family includes the NgoFVII (recognises GCSGC but cleavage site unknown) restriction endonuclease. This entry represents the RIFT related domain [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, F	DNA (5'-D(GPGPGPAPTPTPGPCPCPGPCPTPTPAP*G)-3)'	-	-	-
C, E	DNA (5'-D(CPCPTPAPAPGPCPGPGPCPAPAPTPCP*C)-3)'	-	-	-
A, B	Restriction endonuclease R.NgoVII	endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR048923	Restriction endonuclease, type II, NgoFVII, C-terminal B3-like DNA-binding domain	Domain
A, B	IPR019065	Restriction endonuclease, type II, NgoFVII, N-terminal domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.