4Q85

YcaO with Non-hydrolyzable ATP (AMPCPP) Bound

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	TIGR03549	e4q85B4	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
B	YcaO_2nd	e4q85B1	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
B	EUF08654	e4q85B2	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)
C	TIGR03549	e4q85C1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
C	YcaO_2nd	e4q85C4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
C	EUF08654	e4q85C3	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)
D	TIGR03549	e4q85D1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
D	YcaO_2nd	e4q85D4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
D	EUF08654	e4q85D3	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)
A	TIGR03549	e4q85A1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
A	YcaO_2nd	e4q85A4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
A	EUF08654	e4q85A3	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)
E	TIGR03549	e4q85E1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
E	YcaO_2nd	e4q85E4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
E	EUF08654	e4q85E3	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)
F	TIGR03549	e4q85F1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
F	YcaO_2nd	e4q85F4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
F	EUF08654	e4q85F3	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)
G	TIGR03549	e4q85G3	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
G	YcaO_2nd	e4q85G4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
G	EUF08654	e4q85G2	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)
H	TIGR03549	e4q85H1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain (From Topology)	T: Ribosomal protein S12 methylthiotransferase accessory factor YcaO C-terminal domain	F: TIGR03549	ECOD (1.6)
H	YcaO_2nd	e4q85H4	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: YcaO_2nd	ECOD (1.6)
H	EUF08654	e4q85H3	A: a+b two layers	X: dsRBD-like	H: Heterocyclase TruD C-terminal domain (From Topology)	T: Heterocyclase TruD C-terminal domain	F: EUF08654	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF02624	YcaO cyclodehydratase, ATP-ad Mg2+-binding (YcaO)	YcaO cyclodehydratase, ATP-ad Mg2+-binding	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H	PF18381	YcaO cyclodehydratase C-terminal domain (YcaO_C)	YcaO cyclodehydratase C-terminal domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Ribosomal protein S12 methylthiotransferase accessory factor YcaO	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding pyrophosphatase activity nucleoside triphosphate diphosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity ATP diphosphatase activity hydrolase activity, acting on acid anhydrides catalytic activity	-	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR052903	RPS12_MTA_accessory	Unknown
A, B, C, D, E A, B, C, D, E, F, G, H	IPR003776	YcaO-like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR041080	YcaO cyclodehydratase, C-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

4Q85

YcaO with Non-hydrolyzable ATP (AMPCPP) Bound

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage