4O4S | pdb_00004o4s

Crystal structure of phycobiliprotein lyase CpcT complexed with phycocyanobilin (PCB)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Lipocalins	8052643	3001332	SCOP2B (2022-06-29)
D [auth J]	SCOP2B Superfamily	Lipocalins	8052643	3001332	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Lipocalins	8052643	3001332	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Lipocalins	8052643	3001332	SCOP2B (2022-06-29)
I [auth G]	SCOP2B Superfamily	Lipocalins	8052643	3001332	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Lipocalins	8052643	3001332	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Lipocalins	8052643	3001332	SCOP2B (2022-06-29)
J [auth H]	SCOP2B Superfamily	Lipocalins	8052643	3001332	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Lipocalins	8052643	3001332	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Lipocalins	8052643	3001332	SCOP2B (2022-06-29)
C [auth I]	SCOP2B Superfamily	Lipocalins	8052643	3001332	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Lipocalins	8052643	3001332	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Acetyltransf_16	e4o4sB1	A: beta barrels	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Acetyltransf_16	ECOD (v294.2)
D [auth J]	Acetyltransf_16	e4o4sJ1	A: beta barrels	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Acetyltransf_16	ECOD (v294.2)
G [auth E]	Acetyltransf_16	e4o4sE1	A: beta barrels	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Acetyltransf_16	ECOD (v294.2)
H [auth F]	Acetyltransf_16	e4o4sF1	A: beta barrels	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Acetyltransf_16	ECOD (v294.2)
I [auth G]	Acetyltransf_16	e4o4sG1	A: beta barrels	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Acetyltransf_16	ECOD (v294.2)
K	Acetyltransf_16	e4o4sK1	A: beta barrels	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Acetyltransf_16	ECOD (v294.2)
L	Acetyltransf_16	e4o4sL1	A: beta barrels	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Acetyltransf_16	ECOD (v294.2)
J [auth H]	Acetyltransf_16	e4o4sH1	A: beta barrels	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Acetyltransf_16	ECOD (v294.2)
F [auth D]	Acetyltransf_16	e4o4sD1	A: beta barrels	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Acetyltransf_16	ECOD (v294.2)
E [auth C]	Acetyltransf_16	e4o4sC1	A: beta barrels	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Acetyltransf_16	ECOD (v294.2)
C [auth I]	Acetyltransf_16	e4o4sI1	A: beta barrels	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Acetyltransf_16	ECOD (v294.2)
A	Acetyltransf_16	e4o4sA1	A: beta barrels	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Acetyltransf_16	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.40.128.590	Mainly Beta	Beta Barrel	Lipocalin	CpcT/CpeT domain	CATH (4.3.0)
D [auth J]	2.40.128.590	Mainly Beta	Beta Barrel	Lipocalin	CpcT/CpeT domain	CATH (4.3.0)
G [auth E]	2.40.128.590	Mainly Beta	Beta Barrel	Lipocalin	CpcT/CpeT domain	CATH (4.3.0)
H [auth F]	2.40.128.590	Mainly Beta	Beta Barrel	Lipocalin	CpcT/CpeT domain	CATH (4.3.0)
I [auth G]	2.40.128.590	Mainly Beta	Beta Barrel	Lipocalin	CpcT/CpeT domain	CATH (4.3.0)
K	2.40.128.590	Mainly Beta	Beta Barrel	Lipocalin	CpcT/CpeT domain	CATH (4.3.0)
L	2.40.128.590	Mainly Beta	Beta Barrel	Lipocalin	CpcT/CpeT domain	CATH (4.3.0)
J [auth H]	2.40.128.590	Mainly Beta	Beta Barrel	Lipocalin	CpcT/CpeT domain	CATH (4.3.0)
F [auth D]	2.40.128.590	Mainly Beta	Beta Barrel	Lipocalin	CpcT/CpeT domain	CATH (4.3.0)
E [auth C]	2.40.128.590	Mainly Beta	Beta Barrel	Lipocalin	CpcT/CpeT domain	CATH (4.3.0)
C [auth I]	2.40.128.590	Mainly Beta	Beta Barrel	Lipocalin	CpcT/CpeT domain	CATH (4.3.0)
A	2.40.128.590	Mainly Beta	Beta Barrel	Lipocalin	CpcT/CpeT domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C [auth I], D [auth J], E [auth C], A, B, C [auth I], D [auth J], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K, L	PF06206	CpeT/CpcT family (DUF1001) (CpeT)	CpeT/CpcT family (DUF1001)	This family consists of proteins of proteins belonging to the CpeT/CpcT family. These proteins are around 200 amino acids in length. The proteins contain a conserved motif PYR in the amino terminal half of the protein that may be functionally import ...	This family consists of proteins of proteins belonging to the CpeT/CpcT family. These proteins are around 200 amino acids in length. The proteins contain a conserved motif PYR in the amino terminal half of the protein that may be functionally important. The species distribution of the family is interesting. So far it is restricted to cyanobacteria, cryptomonads and plants. It has been shown that CpcT encodes a bilin lyase responsible for attachment of phycocyanobilin to the beta subunit of phycocyanin [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth I], D [auth J], E [auth C], A, B, C [auth I], D [auth J], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K, L	Phycocyanobilin lyase CpcT	lyase activity catalytic activity	protein-tetrapyrrole linkage primary metabolic process gene expression macromolecule biosynthetic process protein-bilin linkage protein maturation biosynthetic process protein-phycocyanobilin linkage metabolic process cellular process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth I], D [auth J], E [auth C], A, B, C [auth I], D [auth J], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K, L	IPR038672	Chromophore lyase CpcT/CpeT superfamily	Homologous Superfamily
A, B, C [auth I], D [auth J], E [auth C], A, B, C [auth I], D [auth J], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K, L	IPR010404	Chromophore lyase CpcT/CpeT	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.