4H5P

Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Tetramer Bound to Single-stranded RNA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4h5pa_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Rift Valley fever virus (RVFV) N protein	RVFV (Rift Valley fever virus ) [TaxId: 11588 ],	SCOPe (2.08)
B	d4h5pb_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Rift Valley fever virus (RVFV) N protein	RVFV (Rift Valley fever virus ) [TaxId: 11588 ],	SCOPe (2.08)
C	d4h5pc_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Rift Valley fever virus (RVFV) N protein	RVFV (Rift Valley fever virus ) [TaxId: 11588 ],	SCOPe (2.08)
D	d4h5pd_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Rift Valley fever virus (RVFV) N protein	RVFV (Rift Valley fever virus ) [TaxId: 11588 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2B (2022-06-29)
D	SCOP2 Family	BueVN nucleocapsid protein-like	8047523	4005678	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	PepMV Coat protein-like	8089904	3002401	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Tenui_N	e4h5pA1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
B	Tenui_N	e4h5pB1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
C	Tenui_N	e4h5pC1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)
D	Tenui_N	e4h5pD1	A: alpha complex topology	X: Rift Valley fever virus nucleocapsid protein-related (From Homology)	H: Rift Valley fever virus nucleocapsid protein-related	T: Rift Valley fever virus nucleocapsid protein	F: Tenui_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF05733	Tenuivirus/Phlebovirus nucleocapsid protein (Tenui_N)	Tenuivirus/Phlebovirus nucleocapsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Nucleocapsid protein	RNA binding binding organic cyclic compound binding nucleic acid binding identical protein binding protein binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part protein-containing complex ribonucleoprotein complex viral nucleocapsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus
E, F	28-mer poly(U) RNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR015971	Nucleocapsid, Phlebovirus	Family
A, B, C, D	IPR009522	Nucleocapsid, Phlebovirus/Tenuivirus	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.