4E41
Structural basis for the recognition of mutant self by a tumor-specific, MHC class II-restricted T cell receptor G4
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054671 | 3000071 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | MHC antigen-recognition domain | 8040455 | 3000521 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | MHC antigen-recognition domain | 8040455 | 3000521 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054671 | 3000071 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054705 | 3000071 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | MHC antigen-recognition domain | 8055636 | 3000521 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054703 | 3000071 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | MHC antigen-recognition domain | 8034737 | 3000521 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054705 | 3000071 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | MHC antigen-recognition domain | 8055636 | 3000521 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054703 | 3000071 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | MHC antigen-recognition domain | 8034737 | 3000521 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | C1-set_2 | e4e41A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_2 | ECOD (1.6) |
A | MHC_II_alpha | e4e41A2 | A: a+b two layers | X: MHC antigen-recognition domain (From Topology) | H: MHC antigen-recognition domain (From Topology) | T: MHC antigen-recognition domain | F: MHC_II_alpha | ECOD (1.6) |
F | C1-set_2 | e4e41F3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_2 | ECOD (1.6) |
F | MHC_II_alpha | e4e41F4 | A: a+b two layers | X: MHC antigen-recognition domain (From Topology) | H: MHC antigen-recognition domain (From Topology) | T: MHC antigen-recognition domain | F: MHC_II_alpha | ECOD (1.6) |
B | C1-set_2 | e4e41B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_2 | ECOD (1.6) |
B | MHC_II_beta | e4e41B2 | A: a+b two layers | X: MHC antigen-recognition domain (From Topology) | H: MHC antigen-recognition domain (From Topology) | T: MHC antigen-recognition domain | F: MHC_II_beta | ECOD (1.6) |
G | C1-set_2 | e4e41G2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_2 | ECOD (1.6) |
G | MHC_II_beta | e4e41G3 | A: a+b two layers | X: MHC antigen-recognition domain (From Topology) | H: MHC antigen-recognition domain (From Topology) | T: MHC antigen-recognition domain | F: MHC_II_beta | ECOD (1.6) |
D | DUF1968 | e4e41D3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1968 | ECOD (1.6) |
D | V-set_3 | e4e41D4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
I | DUF1968 | e4e41I3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DUF1968 | ECOD (1.6) |
I | V-set_3 | e4e41I4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
E | C1-set | e4e41E3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
E | V-set_3 | e4e41E4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
J | C1-set | e4e41J3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
J | V-set_3 | e4e41J4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
MH2 HLA-DRA*0101_HLA-DBR1*0101 | II-ALPHA | Homo sapiens (human) | HLA-DRA*0101, HLA-DRA*0102 | G-DOMAIN G-ALPHA, C-LIKE-DOMAIN C-LIKE | MH | MH2-ALPHA_BETA | IMGT (202433-0) | |
MH2 HLA-DRA*0101_HLA-DBR1*0101 | II-BETA | Homo sapiens (human) | HLA-DRB1*0101 | G-DOMAIN G-BETA, C-LIKE-DOMAIN C-LIKE | MH | MH2-ALPHA_BETA | IMGT (202433-0) | |
TR G4 | TR-ALPHA | Homo sapiens (human) | TRAV22*01, TRAJ18*01, TRAC*01 | V-DOMAIN V-ALPHA, C-DOMAIN C-ALPHA | TR | TR-ALPHA_BETA-2 | IMGT (202433-0) | |
TR G4 | TR-BETA-2 | Homo sapiens (human) | TRBV5-8*01, TRBJ2-5*01, TRBC2*01, TRBC2*02 | V-DOMAIN V-BETA, C-DOMAIN C-BETA-2 | TR | TR-ALPHA_BETA-2 | IMGT (202433-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain | |
PF00993 | Class II histocompatibility antigen, alpha domain (MHC_II_alpha) | Class II histocompatibility antigen, alpha domain | - | Domain | |
PF00969 | Class II histocompatibility antigen, beta domain (MHC_II_beta) | Class II histocompatibility antigen, beta domain | - | Domain | |
PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain | |