4DXF
Crystal structure of Staphylococcal Superantigen-Like protein 4
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4dxfa1 | All beta proteins | OB-fold | Bacterial enterotoxins | automated matches | automated matches | (Staphylococcus aureus subsp. aureus str. Newman ) [TaxId: 426430 ], | SCOPe (2.08) |
A | d4dxfa2 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Superantigen toxins, C-terminal domain | automated matches | automated matches | (Staphylococcus aureus subsp. aureus str. Newman ) [TaxId: 426430 ], | SCOPe (2.08) |
B | d4dxfb1 | All beta proteins | OB-fold | Bacterial enterotoxins | automated matches | automated matches | (Staphylococcus aureus subsp. aureus str. Newman ) [TaxId: 426430 ], | SCOPe (2.08) |
B | d4dxfb2 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Superantigen toxins, C-terminal domain | automated matches | automated matches | (Staphylococcus aureus subsp. aureus str. Newman ) [TaxId: 426430 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SSL_OB | e4dxfA1 | A: beta barrels | X: OB-fold | H: Bacterial enterotoxins (From Topology) | T: Bacterial enterotoxins | F: SSL_OB | ECOD (1.6) |
A | Stap_Strp_tox_C | e4dxfA2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Stap_Strp_tox_C | ECOD (1.6) |
B | SSL_OB | e4dxfB4 | A: beta barrels | X: OB-fold | H: Bacterial enterotoxins (From Topology) | T: Bacterial enterotoxins | F: SSL_OB | ECOD (1.6) |
B | Stap_Strp_tox_C | e4dxfB3 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Stap_Strp_tox_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.20.120 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | CATH (4.3.0) | |
A | 2.40.50.110 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) | |
B | 3.10.20.120 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | CATH (4.3.0) | |
B | 2.40.50.110 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09199 | Staphylococcal superantigen-like OB-fold domain (SSL_OB) | Staphylococcal superantigen-like OB-fold domain | This OB-fold domain folds into a five-stranded beta-barrel [1]. Members of this family are found in various staphylococcal toxins described as staphylococcal superantigen-like (SSL) proteins that are related to the staphylococcal enterotoxins (SEs) o ... | Domain | |
PF02876 | Staphylococcal/Streptococcal toxin, beta-grasp domain (Stap_Strp_tox_C) | Staphylococcal/Streptococcal toxin, beta-grasp domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Staphylococcal enterotoxin-like toxin | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006126 | Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin, conserved site | Conserved Site | |
IPR016091 | Superantigen toxin, C-terminal | Homologous Superfamily | |
IPR008375 | Staphylococcus aureus exotoxin | Family | |
IPR013307 | Superantigen, staphylococcal/streptococcal toxin, bacterial | Family | |
IPR008992 | Enterotoxin | Homologous Superfamily | |
IPR015282 | Staphylococcal superantigen-like OB-fold domain | Domain |