4DJ4
X-ray structure of mutant N211D of bifunctional nuclease TBN1 from Solanum lycopersicum (Tomato)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4dj4a_ | All alpha proteins | Phospholipase C/P1 nuclease | Phospholipase C/P1 nuclease | automated matches | automated matches | tomato (Solanum lycopersicum ) [TaxId: 4081 ], | SCOPe (2.08) |
B | d4dj4b_ | All alpha proteins | Phospholipase C/P1 nuclease | Phospholipase C/P1 nuclease | automated matches | automated matches | tomato (Solanum lycopersicum ) [TaxId: 4081 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02265 | e4dj4A1 | A: alpha bundles | X: Phospholipase C/P1 nuclease (From Topology) | H: Phospholipase C/P1 nuclease (From Topology) | T: Phospholipase C/P1 nuclease | F: PF02265 | ECOD (1.6) |
B | PF02265 | e4dj4B1 | A: alpha bundles | X: Phospholipase C/P1 nuclease (From Topology) | H: Phospholipase C/P1 nuclease (From Topology) | T: Phospholipase C/P1 nuclease | F: PF02265 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.575.10 | Mainly Alpha | Orthogonal Bundle | P1 Nuclease | P1 Nuclease | CATH (4.2.0) |
B | 1.10.575.10 | Mainly Alpha | Orthogonal Bundle | P1 Nuclease | P1 Nuclease | CATH (4.2.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02265 | S1/P1 Nuclease (S1-P1_nuclease) | S1/P1 Nuclease | This family contains both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003154 | S1/P1 nuclease | Family | |
IPR008947 | Phospholipase C/P1 nuclease domain superfamily | Homologous Superfamily |