4CIS
Structure of MutM in complex with carbocyclic 8-oxo-G containing DNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Fapy_DNA_glyco | e4cisA3 | A: beta barrels | X: MutM N-terminal domain-like | H: N-terminal domain of MutM-like DNA repair proteins (From Topology) | T: N-terminal domain of MutM-like DNA repair proteins | F: Fapy_DNA_glyco | ECOD (1.6) |
A | H2TH | e4cisA1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: H2TH | ECOD (1.6) |
A | zf-FPG_IleRS | e4cisA2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: C-terminal, Zn-finger domain of MutM-like DNA repair proteins (From Topology) | T: C-terminal, Zn-finger domain of MutM-like DNA repair proteins | F: zf-FPG_IleRS | ECOD (1.6) |
B | Fapy_DNA_glyco | e4cisB3 | A: beta barrels | X: MutM N-terminal domain-like | H: N-terminal domain of MutM-like DNA repair proteins (From Topology) | T: N-terminal domain of MutM-like DNA repair proteins | F: Fapy_DNA_glyco | ECOD (1.6) |
B | H2TH | e4cisB1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: H2TH | ECOD (1.6) |
B | zf-FPG_IleRS | e4cisB2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: C-terminal, Zn-finger domain of MutM-like DNA repair proteins (From Topology) | T: C-terminal, Zn-finger domain of MutM-like DNA repair proteins | F: zf-FPG_IleRS | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.190.10 | Alpha Beta | Alpha-Beta Barrel | N-terminal domain of MutM-like DNA repair proteins | MutM-like, N-terminal | CATH (4.3.0) |
A | 1.10.8.50 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
B | 3.20.190.10 | Alpha Beta | Alpha-Beta Barrel | N-terminal domain of MutM-like DNA repair proteins | MutM-like, N-terminal | CATH (4.3.0) |
B | 1.10.8.50 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06827 | Zinc finger found in FPG and IleRS (zf-FPG_IleRS) | Zinc finger found in FPG and IleRS | This zinc binding domain is found at the C-terminus of isoleucyl tRNA synthetase and the enzyme Formamidopyrimidine-DNA glycosylase EC:3.2.2.23. | Domain | |
PF06831 | Formamidopyrimidine-DNA glycosylase H2TH domain (H2TH) | Formamidopyrimidine-DNA glycosylase H2TH domain | Formamidopyrimidine-DNA glycosylase (Fpg) is a DNA repair enzyme that excises oxidised purines from damaged DNA. This family is the central domain containing the DNA-binding helix-two turn-helix domain [1]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000214 | Zinc finger, DNA glycosylase/AP lyase-type | Domain | |
IPR035937 | MutM-like, N-terminal | Homologous Superfamily | |
IPR015887 | DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site | Binding Site | |
IPR012319 | Formamidopyrimidine-DNA glycosylase, catalytic domain | Domain | |
IPR020629 | Formamidopyrimidine-DNA glycosylase | Family | |
IPR015886 | DNA glycosylase/AP lyase, H2TH DNA-binding | Domain | |
IPR010663 | Zinc finger, FPG/IleRS-type | Domain | |
IPR010979 | Small ribosomal subunit protein uS13-like, H2TH | Homologous Superfamily |