3WC0 | pdb_00003wc0

Crystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with GTP


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
PRibosomal_L28e3wc0P1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
ORibosomal_L28e3wc0O1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
NRibosomal_L28e3wc0N1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
MRibosomal_L28e3wc0M1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
LRibosomal_L28e3wc0L1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
KRibosomal_L28e3wc0K1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
JRibosomal_L28e3wc0J1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
IRibosomal_L28e3wc0I1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
HRibosomal_L28e3wc0H1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
GRibosomal_L28e3wc0G1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
FRibosomal_L28e3wc0F1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
ERibosomal_L28e3wc0E1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
DRibosomal_L28e3wc0D1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
CRibosomal_L28e3wc0C1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
BRibosomal_L28e3wc0B1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)
ARibosomal_L28e3wc0A1 A: alpha arraysX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: Ribosomal_L28ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
P3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
O3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
N3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
M3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
L3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
K3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
J3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
I3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
H3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
G3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
F3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
E3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
D3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
C3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
B3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)
A3.30.70.3000 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits tRNA(His) guanylyltransferase (Thg1)CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF14413Thg1 C terminal domain (Thg1C)Thg1 C terminal domainThg1 polymerases contain an additional region of conservation C-terminal to the core palm domain that comprise of 5 helices and two strands [1]. This region has several well-conserved charged residues including a basic residue found towards the end ...Thg1 polymerases contain an additional region of conservation C-terminal to the core palm domain that comprise of 5 helices and two strands [1]. This region has several well-conserved charged residues including a basic residue found towards the end of the first helix of this unit might contribute to the Thg1-specific active site [1]. This C-terminal module of Thg1 is predicted to form a helical bundle that functions equivalently to the fingers of the other nucleic acid polymerases, probably in interacting with the template HtRNA [1].
Domain
A, B, C, D, E
PF04446tRNAHis guanylyltransferase (Thg1)tRNAHis guanylyltransferaseThe Thg1 protein from Saccharomyces cerevisiae is responsible for adding a GMP residue to the 5' end of tRNA His [1]. The catalytic domain Thg1 contains a RRM (ferredoxin) fold palm domain, just like the viral RNA-dependent RNA polymerases, reverse t ...The Thg1 protein from Saccharomyces cerevisiae is responsible for adding a GMP residue to the 5' end of tRNA His [1]. The catalytic domain Thg1 contains a RRM (ferredoxin) fold palm domain, just like the viral RNA-dependent RNA polymerases, reverse transcriptases, family A and B DNA polymerases, adenylyl cyclases, diguanylate cyclases (GGDEF domain) and the predicted polymerase of the CRISPR system [2]. Thg1 possesses an active site with three acidic residues that chelate Mg++ cations [2]. Thg1 catalyzes polymerization similar to the 5'-3' polymerases [2][3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Likely histidyl tRNA-specific guanylyltransferase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR007537tRNAHis guanylyltransferase Thg1Family
A, B, C, D, E
IPR025845Thg1 C-terminal domainDomain
A, B, C, D, E
IPR024956tRNAHis guanylyltransferase catalytic domainDomain
A, B, C, D, E
IPR038469tRNAHis guanylyltransferase Thg1 superfamilyHomologous Superfamily