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 3LIZ | pdb_00003liz

crystal structure of bla g 2 complexed with Fab 4C3

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
B [auth L]d3lizl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
B [auth L]d3lizl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ad3liza1 All beta proteins Acid proteases Acid proteases automated matches automated matches German cockroach (Blattella germanica ) [TaxId: 6973 ], SCOPe (2.08)
Ad3liza2 Artifacts Tags Tags Tags N-terminal Tags German cockroach (Blattella germanica ) [TaxId: 6973 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyAcid proteases 8066387 3001059 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth H]C1-sete3lizH1 A: alpha arraysX: Acyl-CoA binding protein-likeH: Macro domain-likeT: Macro domain-likeF: C1-setECOD (v295.2)
B [auth L]CbiXe3lizL1 A: alpha arraysX: Acyl-CoA binding protein-likeH: Macro domain-likeT: Macro domain-likeF: CbiXECOD (v295.2)
AVinculine3lizA2 A: alpha arraysX: DEATH domainH: PH domain-likeT: PH domain-likeF: VinculinECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A2.60.40.1960 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
A2.40.70.10 Mainly Beta Beta Barrel Cathepsin D, subunit A domain 1CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
C [auth H]Fab 4C3 VH-CH1 Mus musculus (house mouse) IGHV5-6-3*01, IGHJ3*01, IGHG1*02 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202643-0)
B [auth L]Fab 4C3 L-KAPPA Mus musculus (house mouse) IGKV14-111*01, IGKJ2*01, IGKC*01, IGKC*02 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202643-0)

SAbDab2 Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
C [auth H]Heavy ChainIGHV5 -Aspartic protease Bla g 2 | ZINC ION | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseSAbDab (2026-11-06)
B [auth L]Light ChainIGKV14 KappaAspartic protease Bla g 2 | ZINC ION | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseSAbDab (2026-11-06)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth H]4C3 monoclonal antibody Heavy Chain---
B [auth L]4C3 monoclonal antibody Light Chain---
Aspartic protease Bla g 2 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001461Aspartic peptidase A1Family
IPR033121Peptidase family A1 domainDomain
IPR034164Pepsin-like domainDomain
IPR021109Aspartic peptidase domain superfamilyHomologous Superfamily