3J9G

Atomic model of the VipA/VipB, the type six secretion system contractile sheath of Vibrio cholerae from cryo-EM


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CA [auth c]T6SS_VipAe3j9gc1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
EB [auth 5]T6SS_VipAe3j9g51 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
IT6SS_VipAe3j9gI1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
KT6SS_VipAe3j9gK1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
KA [auth k]T6SS_VipAe3j9gk1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
MA [auth m]T6SS_VipAe3j9gm1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
OT6SS_VipAe3j9gO1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
OA [auth o]T6SS_VipAe3j9go1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
QT6SS_VipAe3j9gQ1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
QA [auth q]T6SS_VipAe3j9gq1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
ST6SS_VipAe3j9gS1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
YT6SS_VipAe3j9gY1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
AA [auth a]T6SS_VipAe3j9ga1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
AB [auth 1]T6SS_VipAe3j9g11 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
CT6SS_VipAe3j9gC1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
CB [auth 3]T6SS_VipAe3j9g31 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
ET6SS_VipAe3j9gE1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
EA [auth e]T6SS_VipAe3j9ge1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
GT6SS_VipAe3j9gG1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
GA [auth g]T6SS_VipAe3j9gg1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
GB [auth 7]T6SS_VipAe3j9g71 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
IA [auth i]T6SS_VipAe3j9gi1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
MT6SS_VipAe3j9gM1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
SA [auth s]T6SS_VipAe3j9gs1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
UT6SS_VipAe3j9gU1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
UA [auth u]T6SS_VipAe3j9gu1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
WT6SS_VipAe3j9gW1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
WA [auth w]T6SS_VipAe3j9gw1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
YA [auth y]T6SS_VipAe3j9gy1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: T6SS_VipAECOD (1.6)
BB [auth 2]VipB_Ce3j9g21 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
BB [auth 2]VipB_Ne3j9g22 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
DB [auth 4]VipB_Ce3j9g41 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
DB [auth 4]VipB_Ne3j9g42 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
FA [auth f]VipB_Ce3j9gf1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
FA [auth f]VipB_Ne3j9gf2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
FB [auth 6]VipB_Ce3j9g61 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
FB [auth 6]VipB_Ne3j9g62 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
HVipB_Ce3j9gH1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
HVipB_Ne3j9gH2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
HA [auth h]VipB_Ce3j9gh1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
HA [auth h]VipB_Ne3j9gh2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
LVipB_Ce3j9gL1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
LVipB_Ne3j9gL2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
LA [auth l]VipB_Ce3j9gl1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
LA [auth l]VipB_Ne3j9gl2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
PA [auth p]VipB_Ce3j9gp1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
PA [auth p]VipB_Ne3j9gp2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
RVipB_Ce3j9gR1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
RVipB_Ne3j9gR2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
RA [auth r]VipB_Ce3j9gr1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
RA [auth r]VipB_Ne3j9gr2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
TA [auth t]VipB_Ce3j9gt1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
TA [auth t]VipB_Ne3j9gt2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
VVipB_Ce3j9gV1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
VVipB_Ne3j9gV2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
VA [auth v]VipB_Ce3j9gv1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
VA [auth v]VipB_Ne3j9gv2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
XVipB_Ce3j9gX1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
XVipB_Ne3j9gX2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
ZA [auth z]VipB_Ce3j9gz1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
ZA [auth z]VipB_Ne3j9gz2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
BVipB_Ce3j9gB1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
BA [auth b]VipB_Ce3j9gb1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
BA [auth b]VipB_Ne3j9gb2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
DVipB_Ce3j9gD1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
DVipB_Ne3j9gD2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
DA [auth d]VipB_Ce3j9gd1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
DA [auth d]VipB_Ne3j9gd2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
FVipB_Ce3j9gF1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
FVipB_Ne3j9gF2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
HB [auth 8]VipB_Ce3j9g81 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
HB [auth 8]VipB_Ne3j9g82 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
JVipB_Ce3j9gJ1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
JVipB_Ne3j9gJ2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
JA [auth j]VipB_Ce3j9gj1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
JA [auth j]VipB_Ne3j9gj2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
NVipB_Ce3j9gN1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
NVipB_Ne3j9gN2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
NA [auth n]VipB_Ce3j9gn1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
NA [auth n]VipB_Ne3j9gn2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
PVipB_Ce3j9gP1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
PVipB_Ne3j9gP2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
TVipB_Ce3j9gT1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
TVipB_Ne3j9gT2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
XA [auth x]VipB_Ce3j9gx1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
XA [auth x]VipB_Ne3j9gx2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)
ZVipB_Ce3j9gZ1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: VipB_CECOD (1.6)
ZVipB_Ne3j9gZ2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: VipB_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF05591Type VI secretion system, VipA, VC_A0107 or Hcp2 (T6SS_VipA)Type VI secretion system, VipA, VC_A0107 or Hcp2- Family
PF05943EvpB/VC_A0108, tail sheath N-terminal domain (VipB)EvpB/VC_A0108, tail sheath N-terminal domainEvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB ...EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell [1].
Domain
PF18945EvpB/VC_A0108, tail sheath gpW/gp25-like domain (VipB_2)EvpB/VC_A0108, tail sheath gpW/gp25-like domainEvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/Vip ...EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell [1]. This entry represents the gpW/gp25-like domain.
Domain