3HDY | pdb_00003hdy

Crystal Structure of UDP-galactopyranose mutase (reduced form) in complex with substrate

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	Flavoreductase-like	8080630	3000055	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Flavoreductase-like	8080630	3000055	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Flavoreductase-like	8080630	3000055	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Flavoreductase-like	8080630	3000055	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Flavoreductase-like	8080630	3000055	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Flavoreductase-like	8080630	3000055	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Flavoreductase-like	8080630	3000055	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Flavoreductase-like	8080630	3000055	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Flavoreductase-like	8080630	3000055	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Flavoreductase-like	8080630	3000055	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	Ribosomal_S4e	e3hdyJ1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: Ribosomal_S4e	ECOD (v294.2)
I	Ribosomal_S4e	e3hdyI1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: Ribosomal_S4e	ECOD (v294.2)
H	Ribosomal_S4e	e3hdyH1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: Ribosomal_S4e	ECOD (v294.2)
G	Ribosomal_S4e	e3hdyG1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: Ribosomal_S4e	ECOD (v294.2)
F	Med18	e3hdyF1	A: beta barrels	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: Med18	ECOD (v294.2)
E	Ribosomal_S4e	e3hdyE1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: Ribosomal_S4e	ECOD (v294.2)
D	Med18	e3hdyD1	A: beta barrels	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: Med18	ECOD (v294.2)
C	Glu_cyclase_2	e3hdyC1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: Glu_cyclase_2	ECOD (v294.2)
B	Ribosomal_S4e	e3hdyB1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: Ribosomal_S4e	ECOD (v294.2)
A	Ribosomal_S4e	e3hdyA1	A: beta barrels	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: Ribosomal_S4e	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
I	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
H	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
G	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
F	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
E	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF03275	UDP-galactopyranose mutase (GLF)	UDP-galactopyranose mutase	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF13450	NAD(P)-binding Rossmann-like domain (NAD_binding_8)	NAD(P)-binding Rossmann-like domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	UDP-galactopyranose mutase	isomerase activity UDP-galactopyranose mutase activity catalytic activity intramolecular transferase activity flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR015899	UDP-galactopyranose mutase, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR004379	UDP-galactopyranose mutase	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.