Annotations: 3GZ6

Crystal structure of Shewanella oneidensis NrtR complexed with a 27mer DNA

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RNA_pol_Rpo13	e3gz6A2	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (v294.2)
A	LRR_1,LRR_8	e3gz6A3	A: beta barrels	X: Spectrin repeat-like	H: Spectrin repeat	T: Spectrin repeat	F: LRR_1,LRR_8	ECOD (v294.2)
C [auth B]	RNA_pol_Rpo13	e3gz6B2	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: RNA_pol_Rpo13	ECOD (v294.2)
C [auth B]	AARP2CN	e3gz6B3	A: beta barrels	X: Spectrin repeat-like	H: Spectrin repeat	T: Spectrin repeat	F: AARP2CN	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
A	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
C [auth B]	3.90.79.10	Alpha Beta	Alpha-Beta Complex	Nucleoside Triphosphate Pyrophosphohydrolase	Nucleoside Triphosphate Pyrophosphohydrolase	CATH (4.3.0)
C [auth B]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B]	PF00293	NUDIX domain (NUDIX)	NUDIX domain		Domain
A, C [auth B]	PF21906	NrtR DNA-binding winged helix domain (WHD_NrtR)	NrtR DNA-binding winged helix domain	This entry represents the C-terminal DNA-binding domain of bacterial transcriptional regulator NrtR which is involved in regulating the transcription of NAD biosynthetic genes. This domain has a winged helix-turn-helix structure [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth D]	DNA (27-MER)	-	-	-
D [auth C]	DNA (27-MER)	-	-	-
A, C [auth B]	MutT/nudix family protein	catalytic activity identical protein binding protein binding binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth B]	IPR000086	NUDIX hydrolase domain	Domain
A, C [auth B]	IPR015797	NUDIX hydrolase-like domain superfamily	Homologous Superfamily
A, C [auth B]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, C [auth B]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, C [auth B]	IPR054105	NrtR, DNA-binding winged helix domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.