3CDK

Crystal structure of the co-expressed succinyl-CoA transferase A and B complex from Bacillus subtilis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3cdka_	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	automated matches	automated matches	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
C	d3cdkc_	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	automated matches	automated matches	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8083170	3000693	SCOP2B (2022-06-29)
C	SCOP2 Family	CoA transferase alpha subunit-like	8083169	4001854	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	NagB/RpiA/CoA transferase-like	8083170	3000693	SCOP2 (2022-06-29)
B	SCOP2 Family	CoA transferase beta subunit-like	8098685	4001857	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	NagB/RpiA/CoA transferase-like	8098686	3000693	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	NagB/RpiA/CoA transferase-like	8098686	3000693	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CoA_trans	e3cdkA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans	ECOD (1.6)
C	CoA_trans	e3cdkC1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans	ECOD (1.6)
B	CoA_trans_1	e3cdkB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans_1	ECOD (1.6)
D	CoA_trans_1	e3cdkD1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
C	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
B	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
D	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF01144	Coenzyme A transferase (CoA_trans)	Coenzyme A transferase	-	Domain
B, D	PF01144	Coenzyme A transferase (CoA_trans)	Coenzyme A transferase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A	succinyl-CoA:3-oxo-acid CoA-transferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity CoA-transferase activity	-	-
B, D	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B	succinyl-CoA:3-oxo-acid CoA-transferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity CoA-transferase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR012792	3-oxoacid CoA-transferase, subunit A	Domain
A, C	IPR004163	Coenzyme A transferase binding site	Binding Site
A, C	IPR037171	NagB/RpiA transferase-like	Homologous Superfamily
A, C	IPR004165	Coenzyme A transferase family I	Family
B, D	IPR004164	Coenzyme A transferase active site	Active Site
B, D	IPR037171	NagB/RpiA transferase-like	Homologous Superfamily
B, D	IPR004165	Coenzyme A transferase family I	Family
B, D	IPR012791	3-oxoacid CoA-transferase, subunit B	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.