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 3C5M | pdb_00003c5m

Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CDNA_polI_exo1e3c5mC1 A: alpha arraysX: Alpha helical domain of ribonucleotide reductasesH: Alpha helical domain of ribonucleotide reductasesT: Alpha helical domain of ribonucleotide reductasesF: DNA_polI_exo1ECOD (v295.2)
BDNA_polI_exo1e3c5mB1 A: alpha arraysX: Alpha helical domain of ribonucleotide reductasesH: Alpha helical domain of ribonucleotide reductasesT: Alpha helical domain of ribonucleotide reductasesF: DNA_polI_exo1ECOD (v295.2)
ADNA_polI_exo1e3c5mA1 A: alpha arraysX: Alpha helical domain of ribonucleotide reductasesH: Alpha helical domain of ribonucleotide reductasesT: Alpha helical domain of ribonucleotide reductasesF: DNA_polI_exo1ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
B2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
A2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Oligogalacturonate lyase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR027946Oligogalacturonate lyase domainDomain
A, B, C
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily