Crystal structure of Type IV collagen NC1 domain from bovine lens capsule
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| Q | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| Q | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | RnaseA | e1t60B1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RnaseA | ECOD (v294.2) |
| B | Lyase_1 | e1t60B2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| D | RnaseA | e1t60D1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RnaseA | ECOD (v294.2) |
| D | Lyase_1 | e1t60D2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| E | RnaseA | e1t60E1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RnaseA | ECOD (v294.2) |
| E | Lyase_1 | e1t60E2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| G | RnaseA | e1t60G1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RnaseA | ECOD (v294.2) |
| G | Lyase_1 | e1t60G2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| H | RnaseA | e1t60H1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RnaseA | ECOD (v294.2) |
| H | Lyase_1 | e1t60H2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| J | C4 | e1t60J1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: C4 | ECOD (v294.2) |
| J | Lyase_1 | e1t60J2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| K | RnaseA | e1t60K1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RnaseA | ECOD (v294.2) |
| K | Lyase_1 | e1t60K2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| M | RnaseA | e1t60M1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RnaseA | ECOD (v294.2) |
| M | Lyase_1 | e1t60M2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| N | RnaseA | e1t60N1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RnaseA | ECOD (v294.2) |
| N | Lyase_1 | e1t60N2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| Q | RnaseA | e1t60Q1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RnaseA | ECOD (v294.2) |
| Q | Lyase_1 | e1t60Q2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| T | RnaseA | e1t60T1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RnaseA | ECOD (v294.2) |
| T | Lyase_1 | e1t60T2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| V | RnaseA | e1t60V1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RnaseA | ECOD (v294.2) |
| V | Lyase_1 | e1t60V2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| W | RnaseA | e1t60W1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RnaseA | ECOD (v294.2) |
| W | Lyase_1 | e1t60W2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| S | RnaseA | e1t60S1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RnaseA | ECOD (v294.2) |
| S | Lyase_1 | e1t60S2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| P | RnaseA | e1t60P1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RnaseA | ECOD (v294.2) |
| P | Lyase_1 | e1t60P2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| A | C4 | e1t60A1 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: C4 | ECOD (v294.2) |
| A | Lyase_1 | e1t60A2 | A: beta barrels | X: UBC-like | H: UBC-like | T: Concanavalin A-like lectins/glucanases | F: Lyase_1 | ECOD (v294.2) |
| C | tRNA-synt_1b | e1t60C1 | A: beta barrels | X: HTH | H: Nudix | T: winged helix domain | F: tRNA-synt_1b | ECOD (v294.2) |
| F | tRNA-synt_1b | e1t60F1 | A: beta barrels | X: HTH | H: Nudix | T: winged helix domain | F: tRNA-synt_1b | ECOD (v294.2) |
| L | tRNA-synt_1b | e1t60L1 | A: beta barrels | X: HTH | H: Nudix | T: winged helix domain | F: tRNA-synt_1b | ECOD (v294.2) |
| O | tRNA-synt_1b | e1t60O1 | A: beta barrels | X: HTH | H: Nudix | T: winged helix domain | F: tRNA-synt_1b | ECOD (v294.2) |
| R | tRNA-synt_1b | e1t60R1 | A: beta barrels | X: HTH | H: Nudix | T: winged helix domain | F: tRNA-synt_1b | ECOD (v294.2) |
| U | tRNA-synt_1b | e1t60U1 | A: beta barrels | X: HTH | H: Nudix | T: winged helix domain | F: tRNA-synt_1b | ECOD (v294.2) |
| X | tRNA-synt_1b | e1t60X1 | A: beta barrels | X: HTH | H: Nudix | T: winged helix domain | F: tRNA-synt_1b | ECOD (v294.2) |
| I | tRNA-synt_1b | e1t60I1 | A: beta barrels | X: HTH | H: Nudix | T: winged helix domain | F: tRNA-synt_1b | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF01413 | C-terminal tandem repeated domain in type 4 procollagen (C4) | C-terminal tandem repeated domain in type 4 procollagen | Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome. | Domain | |
| PF01413 | C-terminal tandem repeated domain in type 4 procollagen (C4) | C-terminal tandem repeated domain in type 4 procollagen | Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR008160 | Collagen triple helix repeat | Repeat | |
| IPR036954 | Collagen IV, non-collagenous domain superfamily | Homologous Superfamily | |
| IPR050149 | Collagen superfamily | Family | |
| IPR016187 | C-type lectin fold | Homologous Superfamily | |
| IPR001442 | Collagen IV, non-collagenous | Domain | |
| IPR036954 | Collagen IV, non-collagenous domain superfamily | Homologous Superfamily | |
| IPR016187 | C-type lectin fold | Homologous Superfamily | |
| IPR001442 | Collagen IV, non-collagenous | Domain | |
| IPR019326 | Protein NDNF | Family |














