1R5B
Crystal structure analysis of sup35
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1r5ba1 | All beta proteins | Reductase/isomerase/elongation factor common domain | Translation proteins | Elongation factors | Eukaryotic peptide chain release factor ERF2, post-G domain | fission yeast (Schizosaccharomyces pombe ) [TaxId: 4896 ], | SCOPe (2.08) |
A | d1r5ba2 | All beta proteins | Elongation factor/aminomethyltransferase common domain | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | Eukaryotic peptide chain release factor ERF2, C-terminal domain | fission yeast (Schizosaccharomyces pombe ) [TaxId: 4896 ], | SCOPe (2.08) |
A | d1r5ba3 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | Eukaryotic peptide chain release factor ERF2, G domain | fission yeast (Schizosaccharomyces pombe ) [TaxId: 4896 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Translation factor common region-like | 8019764 | 4004050 | SCOP2 (2022-06-29) |
A | SCOP2 Family | EF-Tu C-terminal domain-like | 8019765 | 4002110 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ras-like P-loop GTPases | 8056488 | 3002022 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | EF-Tu post-G domain-like | 8056490 | 3002024 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | EF-Tu post-G domain-like | 8056489 | 3002024 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GTP_EFTU_D2_1 | e1r5bA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2_1 | ECOD (1.6) |
A | GTP_EFTU_D3_1 | e1r5bA2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: GTP_EFTU_D3_1 | ECOD (1.6) |
A | MnmE_helical_2nd | e1r5bA6 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 2.40.30.10 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain | |
PF03143 | Elongation factor Tu C-terminal domain (GTP_EFTU_D3) | Elongation factor Tu C-terminal domain | Elongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA [1] and binding to EF-Ts Pfam:PF00889 [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050100 | Translation factor GTPase superfamily members | Family | |
IPR003285 | Eukaryotic peptide chain release factor GTP-binding subunit | Family | |
IPR000795 | Translational (tr)-type GTP-binding domain | Domain | |
IPR009001 | Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal | Homologous Superfamily | |
IPR031157 | Tr-type G domain, conserved site | Conserved Site | |
IPR009000 | Translation protein, beta-barrel domain superfamily | Homologous Superfamily | |
IPR004160 | Translation elongation factor EFTu/EF1A, C-terminal | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |