1IG4
Solution Structure of the Methyl-CpG-Binding Domain of Human MBD1 in Complex with Methylated DNA
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | d1ig4a_ | Alpha and beta proteins (a+b) | DNA-binding domain | DNA-binding domain | Methyl-CpG-binding domain, MBD | Methylation-dependent transcriptional repressor MBD1/PCM1 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2 Family | Methyl-CpG-binding domain MBD | 8021561 | 4000938 | SCOP2 (2022-06-29) |
C [auth A] | SCOP2 Superfamily | DNA-binding domain | 8033941 | 3000183 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | PF01429 | e1ig4A1 | A: a+b two layers | X: DNA-binding domain | H: Methyl-CpG-binding domain, MBD (From Topology) | T: Methyl-CpG-binding domain, MBD | F: PF01429 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 3.30.890.10 | Alpha Beta | 2-Layer Sandwich | Methyl-cpg-binding Protein 2 | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A] | PF01429 | Methyl-CpG binding domain (MBD) | Methyl-CpG binding domain | The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [1]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-s ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A] | IPR002857 | Zinc finger, CXXC-type | Domain |
C [auth A] | IPR016177 | DNA-binding domain superfamily | Homologous Superfamily |
C [auth A] | IPR001739 | Methyl-CpG DNA binding | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
C [auth A] | Q9UIS9 | :