1G0D
CRYSTAL STRUCTURE OF RED SEA BREAM TRANSGLUTAMINASE
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1g0da2 | All beta proteins | Immunoglobulin-like beta-sandwich | Transglutaminase, two C-terminal domains | Transglutaminase, two C-terminal domains | Transglutaminase, two C-terminal domains | red seabream (Pagrus major ) [TaxId: 143350 ], | SCOPe (2.08) |
A | d1g0da1 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | Transglutaminase N-terminal domain | Transglutaminase N-terminal domain | red seabream (Pagrus major ) [TaxId: 143350 ], | SCOPe (2.08) |
A | d1g0da4 | Alpha and beta proteins (a+b) | Cysteine proteinases | Cysteine proteinases | Transglutaminase core | Transglutaminase catalytic domain | red seabream (Pagrus major ) [TaxId: 143350 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Transglutaminase core | 8020124 | 4000877 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Transglutaminase N-terminal domain | 8055036 | 4007520 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Transglutaminase, two C-terminal domains | 8055228 | 4007533 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Transglutaminase, two C-terminal domains | 8055406 | 4007533 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Cysteine proteinases | 8032504 | 3001808 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | E set domains | 8055037 | 3000070 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | CsgC/transglutaminase domain-like | 8055229 | 3002048 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | CsgC/transglutaminase domain-like | 8055407 | 3002048 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Transglut_N | e1g0dA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Transglut_N | ECOD (1.6) |
A | Transglut_C_1 | e1g0dA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Transglut_C_1 | ECOD (1.6) |
A | Transglut_C | e1g0dA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Transglut_C | ECOD (1.6) |
A | Transglut_core | e1g0dA4 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Transglut_core | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A | 3.90.260.10 | Alpha Beta | Alpha-Beta Complex | Coagulation Factor XIII | Chain A, domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00868 | Transglutaminase family (Transglut_N) | Transglutaminase family | - | Domain | |
PF00927 | Transglutaminase family, C-terminal ig like domain (Transglut_C) | Transglutaminase family, C-terminal ig like domain | - | Domain | |
PF01841 | Transglutaminase-like superfamily (Transglut_core) | Transglutaminase-like superfamily | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036985 | Transglutaminase-like superfamily | Homologous Superfamily | |
IPR036238 | Transglutaminase, C-terminal domain superfamily | Homologous Superfamily | |
IPR002931 | Transglutaminase-like | Domain | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily | |
IPR001102 | Transglutaminase, N-terminal | Domain | |
IPR008958 | Transglutaminase, C-terminal | Domain | |
IPR050779 | Protein-glutamine gamma-glutamyltransferases | Family | |
IPR023608 | Protein-glutamine gamma-glutamyltransferase, animal | Family | |
IPR013808 | Transglutaminase, active site | Active Site | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |