1DM4 | pdb_00001dm4

SER195ALA MUTANT OF HUMAN THROMBIN COMPLEXED WITH FIBRINOPEPTIDE A (7-16)


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1dm4.1 All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Eukaryotic proteases Thrombin human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd1dm4.1 All beta proteins Trypsin-like serine proteases Trypsin-like serine proteases Eukaryotic proteases Thrombin human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyTrypsin-like serine proteases 8042154 3000114 SCOP2B (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.40.10.10 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteasesCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF09396Thrombin light chain (Thrombin_light)Thrombin light chainThrombin is an enzyme that cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII. Prothrombin is activated on the surface of a phospholipid membrane where factor Xa removes the activation peptide and cleave ...Domain
PF00089Trypsin (Trypsin)TrypsinDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
PROTEIN (ALPHA THROMBIN:LIGHT CHAIN)
PROTEIN (MUTANT ALPHA THROMBIN:HEAVY CHAIN)
PROTEIN (FIBRINOPEPTIDE)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR018992Thrombin light chainDomain
IPR037111Thrombin light chain domain superfamilyHomologous Superfamily
IPR003966Prothrombin/thrombinFamily
IPR018114Serine proteases, trypsin family, histidine active siteActive Site
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR033116Serine proteases, trypsin family, serine active siteActive Site
IPR001254Serine proteases, trypsin domainDomain
IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
IPR000001KringleDomain
IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
IPR051659Serine Protease S1 Domain-Containing ProteinFamily
IPR018056Kringle, conserved siteConserved Site
IPR013806Kringle-like foldHomologous Superfamily
IPR038178Kringle superfamilyHomologous Superfamily
IPR001314Peptidase S1A, chymotrypsin familyFamily
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR018992Thrombin light chainDomain
IPR037111Thrombin light chain domain superfamilyHomologous Superfamily
IPR003966Prothrombin/thrombinFamily
IPR018114Serine proteases, trypsin family, histidine active siteActive Site
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR033116Serine proteases, trypsin family, serine active siteActive Site
IPR001254Serine proteases, trypsin domainDomain
IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
IPR000001KringleDomain
IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
IPR051659Serine Protease S1 Domain-Containing ProteinFamily
IPR018056Kringle, conserved siteConserved Site
IPR013806Kringle-like foldHomologous Superfamily
IPR038178Kringle superfamilyHomologous Superfamily
IPR001314Peptidase S1A, chymotrypsin familyFamily
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IPR037579Fibrinogen/angiopoietin-likeFamily
IPR012290Fibrinogen, alpha/beta/gamma chain, coiled coil domainDomain
IPR020837Fibrinogen, conserved siteConserved Site
IPR021996Fibrinogen alpha C domainDomain
IPR014716Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Homologous Superfamily
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainDomain
IPR036056Fibrinogen-like, C-terminalHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP00734
PharosP00734
PharosP02671

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
ACE RESIDAA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

PSI-MOD :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359