8UK3

The rotavirus VP5/VP8 conformational transition permeabilizes membranes to Ca2+ (class 6 reconstruction)

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1], C [auth 2], E [auth 3]	Outer capsid protein VP4	-	symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of inner membrane biological process involved in interspecies interaction between organisms symbiont entry into host cell via permeabilization of host membrane viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host membrane symbiont-mediated disruption of host cellular anatomical entity symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism virion attachment to host cell symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of inner membrane biological process involved in interspecies interaction between organisms symbiont entry into host cell via permeabilization of host membrane viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host membrane symbiont-mediated disruption of host cellular anatomical entity symbiont entry into host cell viral process symbiont entry into host disruption of anatomical structure in another organism virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host permeabilization of host organelle membrane involved in viral entry into host cell	host cellular component host intracellular part host cytoskeleton host cell part host intracellular region cellular anatomical entity host intracellular organelle membrane host intracellular membrane-bounded organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part host cell plasma membrane host cell membrane host cellular component host intracellular part host cytoskeleton host cell part host intracellular region cellular anatomical entity host intracellular organelle membrane host intracellular membrane-bounded organelle host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell cytoplasm part host cell plasma membrane host cell membrane viral capsid icosahedral viral capsid virion component viral outer capsid host cell endoplasmic reticulum host cell rough endoplasmic reticulum
B [auth f], D [auth g], F [auth h], G [auth i], H [auth j], B [auth f], D [auth g], F [auth h], G [auth i], H [auth j], I [auth k], J [auth l], K [auth m], L [auth n], M [auth o], N [auth p], O [auth q], P [auth r], Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e]	Outer capsid glycoprotein VP7	cation binding ion binding binding metal ion binding small molecule binding	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum cellular anatomical entity host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region viral capsid icosahedral viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum cellular anatomical entity host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region viral capsid icosahedral viral capsid virion component viral outer capsid T=13 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 1], C [auth 2], E [auth 3]	IPR000416	Haemagglutinin outer capsid protein VP4, concanavalin-like domain	Domain
A [auth 1], C [auth 2], E [auth 3]	IPR035330	Rotavirus VP4, membrane interaction domain	Domain
A [auth 1], C [auth 2], E [auth 3]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A [auth 1], C [auth 2], E [auth 3]	IPR035329	Rotavirus VP4 helical domain	Domain
A [auth 1], C [auth 2], E [auth 3]	IPR042546	Outer capsid protein VP4	Family
A [auth 1], C [auth 2], E [auth 3]	IPR038017	Rotavirus VP4, membrane interaction domain superfamily	Homologous Superfamily
B [auth f], D [auth g], F [auth h], G [auth i], H [auth j], B [auth f], D [auth g], F [auth h], G [auth i], H [auth j], I [auth k], J [auth l], K [auth m], L [auth n], M [auth o], N [auth p], O [auth q], P [auth r], Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e]	IPR042207	Glycoprotein VP7, domain 1	Homologous Superfamily
B [auth f], D [auth g], F [auth h], G [auth i], H [auth j], B [auth f], D [auth g], F [auth h], G [auth i], H [auth j], I [auth k], J [auth l], K [auth m], L [auth n], M [auth o], N [auth p], O [auth q], P [auth r], Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e]	IPR001963	Glycoprotein VP7	Family
B [auth f], D [auth g], F [auth h], G [auth i], H [auth j], B [auth f], D [auth g], F [auth h], G [auth i], H [auth j], I [auth k], J [auth l], K [auth m], L [auth n], M [auth o], N [auth p], O [auth q], P [auth r], Q [auth a], R [auth b], S [auth c], T [auth d], U [auth e]	IPR042210	Glycoprotein VP7, domain 2	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.