9XYS | pdb_00009xys

Crystal structure of juvenile hormone acid methyltransferase CfJHAMT in complex with SAH and juvenile hormone III acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 
    0.233 (Depositor), 0.243 (DCC) 
  • R-Value Work: 
    0.182 (Depositor), 0.190 (DCC) 
  • R-Value Observed: 
    0.185 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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Ligand Structure Quality Assessment 


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Literature

Molecular insights into juvenile hormone maturation by juvenile hormone acid methyltransferase.

Picard, M.E.Cusson, M.Shi, R.

(2026) J Biological Chem : 111474-111474

  • DOI: https://doi.org/10.1016/j.jbc.2026.111474
  • Primary Citation Related Structures: 
    9XYO, 9XYQ, 9XYS

  • PubMed Abstract: 

    Juvenile hormone acid methyltransferase (JHAMT) is an enzyme involved in the biosynthesis of juvenile hormone (JH) in insects, catalyzing the methylation of farnesoic acid and JH acids to produce active JHs. Given its important role in JH biosynthesis, JHAMT has attracted significant interest as a potential target for pest control strategies. Inhibiting JHAMT activity could disrupt normal JH production, leading to developmental abnormalities and reduced reproductive success in pest species. We have determined the crystal structure of a JHAMT from the spruce budworm Choristoneura fumiferana (CfJHAMT) in complex with the cofactor product S-adenosyl-L-homocysteine (SAH) and the substrate juvenile hormone acid III, at a resolution of 1.77 Å, and in the presence of SAH alone. Structural and biochemical analyses, supported by site-directed mutagenesis, revealed key residues involved in cofactor and substrate recognition. A proximity-based catalytic mechanism is proposed wherein critical interactions position the substrate and cofactor for methyl group transfer. These findings contribute to our understanding of the structure-function relationship of CfJHAMT and offer preliminary structural insights that may assist in the development of inhibitors, which could potentially be used to target JH biosynthesis in pest insects.


  • Organizational Affiliation
    • Département de biochimie, de microbiologie et de bio-informatique, Institut de Biologie Intégrative et des Systèmes, Université Laval, Quebec City, QC, G1V 0A6, Canada; PROTEO, Université du Québec à Montréal, Montreal, QC, H2X 3Y7, Canada.

Macromolecule Content 

  • Total Structure Weight: 34.87 kDa 
  • Atom Count: 2,350 
  • Modeled Residue Count: 265 
  • Deposited Residue Count: 293 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
juvenile hormone acid methyltransferase JHAMT293Choristoneura fumiferanaMutation(s): 0 

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SAH
(Subject of Investigation/LOI)

Query on SAH



Download:Ideal Coordinates CCD File
B [auth A]S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
JH3
(Subject of Investigation/LOI)

Query on JH3



Download:Ideal Coordinates CCD File
C [auth A]methyl (2E,6E)-9-[(2R)-3,3-dimethyloxiran-2-yl]-3,7-dimethylnona-2,6-dienoate
C16 H26 O3
QVJMXSGZTCGLHZ-HONBPKQLSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free:  0.233 (Depositor), 0.243 (DCC) 
  • R-Value Work:  0.182 (Depositor), 0.190 (DCC) 
  • R-Value Observed: 0.185 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 34.923α = 90
b = 40.744β = 90.75
c = 96.761γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
SCALAdata scaling
XDSdata reduction
MOLREPphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)CanadaRGPIN-2020-06954

Revision History  (Full details and data files)

  • Version 1.0: 2026-05-06
    Type: Initial release