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 9WQ0 | pdb_00009wq0

cryo-EM structure of human organic solute transporter in complex with ethinylestradiol


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9WQ0

This is version 1.1 of the entry. See complete history. 

Literature

Structural insights into OST alpha / beta-mediated transport of bile acids and steroid conjugates.

Sun, X., Tian, T., Low, M., Li, S., Yao, D., Yuan, Y., Cao, M., Lei, M., Wang, Y., Chen, H., Lan, P., Xia, Q., Xue, J.

(2026) Nat Struct Mol Biol 33: 1288-1298

  • DOI: https://doi.org/10.1038/s41594-026-01825-4
  • Primary Citation Related Structures: 
    9WPL, 9WPY, 9WPZ, 9WQ0, 9WQR

  • PubMed Abstract: 

    Mammalian organic solute transporter α/β (OSTα/β) is crucial for the enterohepatic circulation of bile acids and the homeostasis of steroid conjugates, mediating their movement across membranes as an obligate heterodimer. Here we present high-resolution cryo-EM structures of human OSTα/β in apo, substrate-bound and inhibitor-bound states, revealing a tetrameric organization as a homodimer of heterodimers that is required for membrane activity. Substrates bind within a surface-exposed tunnel formed by transmembrane helices 5 and 6, which is unexpectedly sealed by multiple palmitoyl chains covalently attached to a conserved intracellular loop IL2. Two chemically distinct inhibitors, fidaxomicin and ethinylestradiol, disrupt transport by both competing for the substrate-binding pocket and sterically occluding the tunnel. Together with biochemical and evolutionary analyses, our work defines a distinctive class of solute carriers that uses palmitoylation to facilitate substrate transport, a mechanism conserved across eukaryotes.


  • Organizational Affiliation: 
    • Department of Liver Surgery, Renji Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.

Macromolecule Content 

  • Total Structure Weight: 117.46 kDa 
  • Atom Count: 6,818 
  • Modeled Residue Count: 760 
  • Deposited Residue Count: 936 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Organic solute transporter subunit alpha
A, C
340Homo sapiensMutation(s): 0 
Gene Names: SLC51A, OSTA
UniProt & NIH Common Fund Data Resources
Find proteins for Q86UW1 (Homo sapiens)
Explore Q86UW1 
Go to UniProtKB:  Q86UW1
PHAROS:  Q86UW1
GTEx:  ENSG00000163959 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ86UW1
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Organic solute transporter subunit beta
B, D
128Homo sapiensMutation(s): 0 
Gene Names: SLC51B, OSTB
UniProt & NIH Common Fund Data Resources
Find proteins for Q86UW2 (Homo sapiens)
Explore Q86UW2 
Go to UniProtKB:  Q86UW2
PHAROS:  Q86UW2
GTEx:  ENSG00000186198 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ86UW2
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
POV

Query on POV



Download:Ideal Coordinates CCD File
IA [auth C]
JA [auth C]
P [auth A]
Q [auth A]
U [auth A]
IA [auth C],
JA [auth C],
P [auth A],
Q [auth A],
U [auth A],
W [auth C]
(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate
C42 H82 N O8 P
WTJKGGKOPKCXLL-PFDVCBLKSA-N
CLR

Query on CLR



Download:Ideal Coordinates CCD File
AA [auth C]
E [auth A]
F [auth A]
G [auth A]
H [auth A]
AA [auth C],
E [auth A],
F [auth A],
G [auth A],
H [auth A],
T [auth A],
V [auth C],
X [auth C],
Y [auth C],
Z [auth C]
CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N
3WF
(Subject of Investigation/LOI)

Query on 3WF



Download:Ideal Coordinates CCD File
KA [auth C],
LA [auth C],
R [auth A],
S [auth A]
Ethinyl estradiol
C20 H24 O2
BFPYWIDHMRZLRN-SLHNCBLASA-N
PLM

Query on PLM



Download:Ideal Coordinates CCD File
BA [auth C]
CA [auth C]
DA [auth C]
EA [auth C]
FA [auth C]
BA [auth C],
CA [auth C],
DA [auth C],
EA [auth C],
FA [auth C],
GA [auth C],
HA [auth C],
I [auth A],
J [auth A],
K [auth A],
L [auth A],
M [auth A],
N [auth A],
O [auth A]
PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)ChinaNCTIB2022HS02004

Revision History  (Full details and data files)

  • Version 1.0: 2026-06-10
    Type: Initial release
  • Version 1.1: 2026-10-07
    Changes: Data collection, Database references