9ROX | pdb_00009rox

Asymmetric unit of bacteriophage 812 prohead II with the complete set of minor capsid proteins

• PDB DOI: https://doi.org/10.2210/pdb9ROX/pdb
• EM Map EMD-54133: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Staphylococcus phage 812K1/420
• Mutation(s): No 


• Deposited: 2025-06-23 Released: 2026-06-24 
• Deposition Author(s): Zlatohurska, M., Prochazkova, M., Cienikova, Z., Fuzik, T., Plevka, P.
• Funding Organization(s): European Research Council (ERC), Ministry of Education, Youth and Sports of the Czech Republic

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental

Literature

Cryo-ET of S. aureus infection by Herelleviridae phage 812

Zlatohurska, M., Prochazkova, M., Cienikova, Z., Fuzik, T., Bardy, P., Pantucek, R., Plevka, P.

To be published.

Biological Assembly 1  

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 881.17 kDa 
• Atom Count: 61,783 
• Modeled Residue Count: 7,934 
• Deposited Residue Count: 7,962 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative Ig-like protein	A, E, K, O, P	174	Staphylococcus phage 812K1/420	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein	B, D, F, G, H, I, J, L, M, N, Q, R, S, T, U, V [auth W]	439	Staphylococcus phage 812K1/420	Mutation(s): 0
UniProt
Find proteins for A1YTN4 (Staphylococcus phage 812) Explore A1YTN4  Go to UniProtKB:  A1YTN4

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Virion component	C	68	Staphylococcus phage 812K1/420	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	5.0beta
MODEL REFINEMENT	PHENIX	1.21

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2026-06-24 
Deposition Author(s): Zlatohurska, M., Prochazkova, M., Cienikova, Z., Fuzik, T., Plevka, P.

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Funding Organization	Location	Grant Number
European Research Council (ERC)	European Union	101043452
Ministry of Education, Youth and Sports of the Czech Republic	Czech Republic	LX22NPO5103
Ministry of Education, Youth and Sports of the Czech Republic	Czech Republic	CZ.02.01.01/00/22_008/0004607
European Research Council (ERC)	European Union	1233487

Revision History  

• Version 1.0: 2026-06-24
  Type: Initial release