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Asymmetric unit of bacteriophage 812 prohead II with the complete set of minor capsid proteins
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5LII experimental model PDB 5LIJ
Sample Staphylococcus phage 812K1/420 Sample Components The asymmetric unit of bacteriophage 812 prohead II with the complete set of minor capsid proteins
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details One-side blotting
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 20569 Reported Resolution (Å) 3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (5LII) Refinement Space REAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 81000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO 1.8.3 IMAGE ACQUISITION SerialEM MODEL FITTING Coot 0.9.4.1.EL INITIAL EULER ASSIGNMENT RELION 5.0beta FINAL EULER ASSIGNMENT RELION 5.0beta CLASSIFICATION RELION 5.0beta RECONSTRUCTION RELION 5.0beta MODEL REFINEMENT PHENIX 1.21
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 68779