9QH1 | pdb_00009qh1

ATP-bound wild type Wzm-Wzt from Mycobacterium abscessus in LMNG


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of lipid-linked galactan export by the mycobacterial ABC transporter Wzm-Wzt.

Garaeva, A.A.Fabianova, V.Savkova, K.Huszar, S.Xue, X.Lowary, T.L.Mikusova, K.Seeger, M.A.

(2026) Nat Commun 

  • DOI: https://doi.org/10.1038/s41467-026-70429-9
  • Primary Citation Related Structures: 
    9QFX, 9QGU, 9QH1, 9QHJ, 9QHK, 9QHV, 9QHW, 9QHX

  • PubMed Abstract: 

    Mycobacteria, including Mycobacterium tuberculosis, possess a unique cell envelope containing arabinogalactan, a heteropolysaccharide critical for cell wall integrity and target of several tuberculosis drugs. The cytosolic precursor of arabinogalactan, lipid-linked galactan (LLG), is translocated across the plasma membrane by the essential ABC transporter Wzm-Wzt through a molecular mechanism that is poorly understood. Here, we present a series of cryo-EM structures of Wzm-Wzt from Mycobacterium abscessus, representing different conformations of the transport cycle. Conserved residues lining the proposed LLG translocation pathway were investigated by three orthologous functional assays, revealing that the cytosolic gate helix (GH) plays a key functional role in polysaccharide transport. Our data suggests that the hydrophobic polyprenyl-moiety is translocated first, followed by the galactan-polysaccharide, which requires Wzm-Wzt to open a continuous channel through which the sugar chain is ratcheted at the expense of ATP hydrolysis. Our results provide a rational basis for the development of drugs that inhibit mycobacterial cell wall biosynthesis.


  • Organizational Affiliation
    • Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland. alisa.garaeva@uzh.ch.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Probable O-antigen/lipopolysaccharide transport integral membrane protein ABC transporter RfbD
A, B
307Mycobacteroides abscessusMutation(s): 0 
Gene Names: MAB_0201c
UniProt
Find proteins for B1MEN7 (Mycobacteroides abscessus (strain ATCC 19977 / DSM 44196 / CCUG 20993 / CIP 104536 / JCM 13569 / NCTC 13031 / TMC 1543 / L948))
Explore B1MEN7 
Go to UniProtKB:  B1MEN7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB1MEN7
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Probable o-antigen/lipopolysaccharide transport ATP-binding protein ABC transporter RfbE
C, D
263Mycobacteroides abscessusMutation(s): 0 
Gene Names: tagHSAMEA2070301_03522SAMEA2070793_04484
EC: 3.6.3.40
UniProt
Find proteins for A0A1N1NVQ2 (Mycobacteroides abscessus subsp. abscessus)
Explore A0A1N1NVQ2 
Go to UniProtKB:  A0A1N1NVQ2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1N1NVQ2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union772190
Swiss National Science FoundationSwitzerlandPP00P3_170625
European Union (EU)European UnionNextGenerationEU, Recovery and Resilience Plan for Slovakia, project No. 09I01-03-V03- 00001
University of ZurichSwitzerlandFK-21-041

Revision History  (Full details and data files)

  • Version 1.0: 2026-03-11
    Type: Initial release
  • Version 1.1: 2026-03-25
    Changes: Data collection, Database references