9QHX | pdb_00009qhx

ATP-bound E178Q Wzm-Wzt from Mycobacterium abscessus in nanodiscs


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.47 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Structural basis of lipid-linked galactan export by the mycobacterial ABC transporter Wzm-Wzt.

Garaeva, A.A.Fabianova, V.Savkova, K.Huszar, S.Xue, X.Lowary, T.L.Mikusova, K.Seeger, M.A.

(2026) Nat Commun 17

  • DOI: https://doi.org/10.1038/s41467-026-70429-9
  • Primary Citation Related Structures: 
    9QFX, 9QGU, 9QH1, 9QHJ, 9QHK, 9QHV, 9QHW, 9QHX

  • PubMed Abstract: 

    Mycobacteria, including Mycobacterium tuberculosis, possess a unique cell envelope containing arabinogalactan, a heteropolysaccharide critical for cell wall integrity and target of several tuberculosis drugs. The cytosolic precursor of arabinogalactan, lipid-linked galactan (LLG), is translocated across the plasma membrane by the essential ABC transporter Wzm-Wzt through a molecular mechanism that is poorly understood. Here, we present a series of cryo-EM structures of Wzm-Wzt from Mycobacterium abscessus, representing different conformations of the transport cycle. Conserved residues lining the proposed LLG translocation pathway were investigated by three orthologous functional assays, revealing that the cytosolic gate helix (GH) plays a key functional role in polysaccharide transport. Our data suggests that the hydrophobic polyprenyl-moiety is translocated first, followed by the galactan-polysaccharide, which requires Wzm-Wzt to open a continuous channel through which the sugar chain is ratcheted at the expense of ATP hydrolysis. Our results provide a rational basis for the development of drugs that inhibit mycobacterial cell wall biosynthesis.


  • Organizational Affiliation
    • Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland. alisa.garaeva@uzh.ch.

Macromolecule Content 

  • Total Structure Weight: 128.47 kDa 
  • Atom Count: 8,394 
  • Modeled Residue Count: 1,048 
  • Deposited Residue Count: 1,134 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ABC transporter permease
A, B
307Mycobacteroides abscessusMutation(s): 0 
Gene Names: D2E76_07265
UniProt
Find proteins for A0ABD7HS64 (Mycobacteroides abscessus)
Explore A0ABD7HS64 
Go to UniProtKB:  A0ABD7HS64
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0ABD7HS64
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
ABC transporter ATP-binding protein
C, D
260Mycobacteroides abscessusMutation(s): 1 
Gene Names: tagHD2E76_07275ERS075527_00637ERS075579_04253
EC: 3.6.3.40
UniProt
Find proteins for A0A0U0YYE2 (Mycobacteroides abscessus)
Explore A0A0U0YYE2 
Go to UniProtKB:  A0A0U0YYE2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0U0YYE2
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.47 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union772190
Swiss National Science FoundationSwitzerlandPP00P3_170625
European Union (EU)European UnionNextGenerationEU, Recovery and Resilience Plan for Slovakia, project No. 09I01-03-V03- 00001
University of ZurichSwitzerlandFK-21-041

Revision History  (Full details and data files)

  • Version 1.0: 2026-03-11
    Type: Initial release
  • Version 1.1: 2026-03-25
    Changes: Data collection, Database references
  • Version 1.2: 2026-04-08
    Changes: Data collection, Database references