9PMK | pdb_00009pmk

PhuZ Tubulin Tetramer from phage Goslar

PDB DOI: https://doi.org/10.2210/pdb9PMK/pdb
EM Map EMD-71738: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Goslarvirus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-07-17 Released: 2025-12-24
Deposition Author(s): Basu, D., Gu, Y., Corbett, K.D.
Funding Organization(s): Howard Hughes Medical Institute (HHMI)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

Validation slider image for 9PMK

This is version 1.0 of the entry. See complete history.

Literature

PhuZ Tubulin Tetramer from phage Goslar

Basu, D., Gu, Y., Corbett, K.D.

To be published.

Macromolecule Content

Total Structure Weight: 144.74 kDa
Atom Count: 10,060
Modeled Residue Count: 1,304
Deposited Residue Count: 1,312
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tubulin/FtsZ GTPase domain-containing protein	A [auth C], B, C [auth A], D	328	Goslarvirus	Mutation(s): 0 Gene Names: Goslar_00201
UniProt
Find proteins for A0A482GH76 (Escherichia phage vB_EcoM_Goslar) Explore A0A482GH76 Go to UniProtKB: A0A482GH76
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A482GH76
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
G2P (Subject of Investigation/LOI) Query on G2P Download:Ideal Coordinates CCD File SDF format, chain H [auth D] SDF format, chain G [auth A] SDF format, chain F [auth B] SDF format, chain E [auth C] MOL2 format, chain H [auth D] MOL2 format, chain G [auth A] MOL2 format, chain F [auth B] MOL2 format, chain E [auth C] mmCIF format, chain H [auth D] mmCIF format, chain G [auth A] mmCIF format, chain F [auth B] mmCIF format, chain E [auth C]	E [auth C], F [auth B], G [auth A], H [auth D]	PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER C₁₁ H₁₈ N₅ O₁₃ P₃ GXTIEXDFEKYVGY-KQYNXXCUSA-N		Interactions Focus chain E [auth C] Focus chain F [auth B] Focus chain G [auth A] Focus chain H [auth D] Interactions & Density Focus chain E [auth C] Focus chain F [auth B] Focus chain G [auth A] Focus chain H [auth D]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.84 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX
RECONSTRUCTION	cryoSPARC

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-12-24

Deposition Author(s):

Funding Organization	Location	Grant Number
Howard Hughes Medical Institute (HHMI)	United States	Emerging Pathogens Initiative

Revision History (Full details and data files)

Version 1.0: 2025-12-24
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.