9O1J | pdb_00009o1j

Pseudomonas aeruginosa ATPase State3 F1Fo focused

PDB DOI: https://doi.org/10.2210/pdb9O1J/pdb
EM Map EMD-70009: EMDB EMDataResource

Classification: ELECTRON TRANSPORT
Organism(s): Pseudomonas aeruginosa
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-04-03 Released: 2025-12-10
Deposition Author(s): Stewart, A.G., Sobti, M.
Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Distinct Structural Features of Pseudomonas aeruginosa ATP Synthase Revealed by Cryo Electron Microscopy

Sobti, M., Stewart, A.G.

To be published.

Macromolecule Content

Total Structure Weight: 538.05 kDa
Atom Count: 36,919
Modeled Residue Count: 4,883
Deposited Residue Count: 4,990
Unique protein chains: 8

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase subunit alpha	A, B, C	514	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: atpA, PSPA7_6358 EC: 7.1.2.2
UniProt
Find proteins for A6VF34 (Pseudomonas paraeruginosa (strain DSM 24068 / PA7)) Explore A6VF34 Go to UniProtKB: A6VF34
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A6VF34
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase subunit beta	D, E, F	464	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: atpD, PSPA7_6356 EC: 7.1.2.2
UniProt
Find proteins for A6VF32 (Pseudomonas paraeruginosa (strain DSM 24068 / PA7)) Explore A6VF32 Go to UniProtKB: A6VF32
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A6VF32
Sequence Annotations Expand
Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase gamma chain	G	286	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: atpG, PSPA7_6357
UniProt
Find proteins for A6VF33 (Pseudomonas paraeruginosa (strain DSM 24068 / PA7)) Explore A6VF33 Go to UniProtKB: A6VF33
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A6VF33
Sequence Annotations Expand
Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase epsilon chain	H	141	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: atpC, PSPA7_6355
UniProt
Find proteins for A6VF31 (Pseudomonas paraeruginosa (strain DSM 24068 / PA7)) Explore A6VF31 Go to UniProtKB: A6VF31
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A6VF31
Sequence Annotations Expand
Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase subunit c	I J K [auth L] L [auth M] M [auth N] I, J, K [auth L], L [auth M], M [auth N], N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S]	85	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: atpE, PSPA7_6361
UniProt
Find proteins for A6VF37 (Pseudomonas paraeruginosa (strain DSM 24068 / PA7)) Explore A6VF37 Go to UniProtKB: A6VF37
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A6VF37
Sequence Annotations Expand
Reference Sequence

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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase subunit delta	S [auth W]	178	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: atpH, PSPA7_6359
UniProt
Find proteins for A6VF35 (Pseudomonas paraeruginosa (strain DSM 24068 / PA7)) Explore A6VF35 Go to UniProtKB: A6VF35
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A6VF35
Sequence Annotations Expand
Reference Sequence

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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase subunit b	T [auth X], U [auth Y]	156	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: atpF, PA14_73290
UniProt
Find proteins for Q02DF0 (Pseudomonas aeruginosa (strain UCBPP-PA14)) Explore Q02DF0 Go to UniProtKB: Q02DF0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q02DF0
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase subunit a	V [auth a]	289	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: atpB, PSPA7_6362
UniProt
Find proteins for A6VF38 (Pseudomonas paraeruginosa (strain DSM 24068 / PA7)) Explore A6VF38 Go to UniProtKB: A6VF38
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A6VF38
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP (Subject of Investigation/LOI) Query on ATP Download Ideal Coordinates CCD File SDF format, chain AA [auth C] SDF format, chain W [auth A] SDF format, chain Y [auth B] MOL2 format, chain AA [auth C] MOL2 format, chain W [auth A] MOL2 format, chain Y [auth B] mmCIF format, chain AA [auth C] mmCIF format, chain W [auth A] mmCIF format, chain Y [auth B]	AA [auth C], W [auth A], Y [auth B]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Interactions Focus chain AA [auth C] Focus chain W [auth A] Focus chain Y [auth B] Interactions & Density Focus chain AA [auth C] Focus chain W [auth A] Focus chain Y [auth B]
ADP (Subject of Investigation/LOI) Query on ADP Download Ideal Coordinates CCD File SDF format, chain CA [auth D] SDF format, chain EA [auth E] SDF format, chain GA [auth F] MOL2 format, chain CA [auth D] MOL2 format, chain EA [auth E] MOL2 format, chain GA [auth F] mmCIF format, chain CA [auth D] mmCIF format, chain EA [auth E] mmCIF format, chain GA [auth F]	CA [auth D], EA [auth E], GA [auth F]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain CA [auth D] Focus chain EA [auth E] Focus chain GA [auth F] Interactions & Density Focus chain CA [auth D] Focus chain EA [auth E] Focus chain GA [auth F]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain BA [auth C] SDF format, chain FA [auth E] SDF format, chain X [auth A] SDF format, chain Z [auth B] SDF format, chain DA [auth D] MOL2 format, chain BA [auth C] MOL2 format, chain FA [auth E] MOL2 format, chain X [auth A] MOL2 format, chain Z [auth B] MOL2 format, chain DA [auth D] mmCIF format, chain BA [auth C] mmCIF format, chain FA [auth E] mmCIF format, chain X [auth A] mmCIF format, chain Z [auth B] mmCIF format, chain DA [auth D]	BA [auth C], DA [auth D], FA [auth E], X [auth A], Z [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain BA [auth C] Focus chain DA [auth D] Focus chain FA [auth E] Focus chain X [auth A] Focus chain Z [auth B] Interactions & Density Focus chain BA [auth C] Focus chain DA [auth D] Focus chain FA [auth E] Focus chain X [auth A] Focus chain Z [auth B]