9NGJ | pdb_00009ngj

Deposited: 2025-02-22 Released: 2025-12-17
Deposition Author(s): Gupta, M., Khandelwal, N.K., Stroud, R.M.
Funding Organization(s): National Institutes of Health/National Institute on Aging (NIH/NIA)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP-binding cassette sub-family D member 3	A [auth B], B [auth A]	688	Homo sapiens	Mutation(s): 0 Gene Names: ABCD3, PMP70, PXMP1 EC: 3.1.2 (PDB Primary Data), 7.6.2 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for P28288 (Homo sapiens) Explore P28288 Go to UniProtKB: P28288
PHAROS: P28288 GTEx: ENSG00000117528
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P28288
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A1CAN (Subject of Investigation/LOI) Query on A1CAN Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain C [auth B] MOL2 format, chain D [auth A] MOL2 format, chain C [auth B] mmCIF format, chain D [auth A] mmCIF format, chain C [auth B]	C [auth B], D [auth A]	S-{(3R,5S,9S)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5,10,14-tetraoxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (3S,7R,11R)-3,7,11,15-tetramethylhexadecanethioate (non-preferred name) C₄₁ H₇₄ N₇ O₁₇ P₃ S NRJQGHHZMSOUEN-KBMDNNSFSA-N		Interactions Focus chain C [auth B] Focus chain D [auth A] Interactions & Density Focus chain C [auth B] Focus chain D [auth A]