9MGG | pdb_00009mgg

beta-barrel assembly machine from Escherichia coli in a late state of substrate assembly


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structures of folding intermediates on BAM show diverse substrates fold by a uniform mechanism.

Thomson, B.D.Marquez, M.D.Rawson, S.Dos Santos, T.M.A.Harrison, S.C.Kahne, D.

(2025) bioRxiv 

  • DOI: https://doi.org/10.1101/2025.10.16.682720
  • Primary Citation of Related Structures:  
    9MGE, 9MGF, 9MGG

  • PubMed Abstract: 

    The outer membranes of mitochondria, chloroplasts, and Gram-negative bacteria contain β-barrel membrane proteins that are assembled by conserved multi-subunit machines. In bacteria, the β-barrel assembly machine (BAM) folds over a hundred compositionally different substrates into barrels that vary greatly in size. Some larger barrels require globular proteins to plug the barrel lumen. How a single machine can assemble such different barrels is unknown. Here we report three structures representing progressively folded stages of a 16-stranded barrel engaged with BAM, as well as the structure of a late-stage folding intermediate of a 26-stranded substrate folding around its soluble lipoprotein plug on BAM. We find that BAM catalyzes folding of these substrates by a uniform mechanism in which BAM undergoes major distortions to accommodate the nascent barrel.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Outer membrane protein assembly factor BamA798Escherichia coli K-12Mutation(s): 1 
Gene Names: bamAyaeTyzzNyzzYb0177JW0172
UniProt
Find proteins for P0A940 (Escherichia coli (strain K12))
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Go to UniProtKB:  P0A940
Entity Groups  
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UniProt GroupP0A940
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Outer membrane protein assembly factor BamCB [auth C]344Escherichia coli K-12Mutation(s): 0 
Gene Names: bamCdapXnlpBb2477JW2462
UniProt
Find proteins for P0A903 (Escherichia coli (strain K12))
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Go to UniProtKB:  P0A903
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UniProt GroupP0A903
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Outer membrane protein assembly factor BamDC [auth D]245Escherichia coli K-12Mutation(s): 0 
Gene Names: bamDyfiOb2595JW2577
UniProt
Find proteins for P0AC02 (Escherichia coli (strain K12))
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Go to UniProtKB:  P0AC02
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UniProt GroupP0AC02
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Outer membrane protein assembly factor BamED [auth E]113Escherichia coli K-12Mutation(s): 0 
Gene Names: bamEsmpAb2617JW2598
UniProt
Find proteins for P0A937 (Escherichia coli (strain K12))
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Go to UniProtKB:  P0A937
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UniProt GroupP0A937
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Outer membrane protein assembly factor BamBE [auth B]392Escherichia coli K-12Mutation(s): 0 
Gene Names: bamByfgLb2512JW2496
UniProt
Find proteins for P77774 (Escherichia coli (strain K12))
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UniProt GroupP77774
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  • Reference Sequence
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Outer membrane protein assembly factor BamA568Escherichia coli K-12Mutation(s): 1 
Gene Names: bamAyaeTyzzNyzzYb0177JW0172
UniProt
Find proteins for P0A940 (Escherichia coli (strain K12))
Explore P0A940 
Go to UniProtKB:  P0A940
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UniProt GroupP0A940
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX
MODEL REFINEMENTCoot

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01AI081059
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesU19AI158028

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-17
    Type: Initial release
  • Version 1.1: 2025-12-24
    Changes: Data collection, Database references