9LQ7 | pdb_00009lq7

Deposited: 2025-01-28 Released: 2025-11-26
Deposition Author(s): Jin, X., Duan, B., Chen, Z., Zhao, B.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Macromolecule Content

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cmr1	A	469	Bacteroides fragilis	Mutation(s): 0 Gene Names: F2Z89_11915, F3B44_04900, NXW39_14635
UniProt
Find proteins for A0A5M5QTL0 (Bacteroides fragilis) Explore A0A5M5QTL0 Go to UniProtKB: A0A5M5QTL0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A5M5QTL0
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Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Type III-B CRISPR-associated protein Cas10/Cmr2	B	600	Bacteroides fragilis	Mutation(s): 0 Gene Names: cas10, F2Z29_06610, F3B44_04895, FSA06_24385, NXW39_14640
UniProt
Find proteins for A0A5C6J4N7 (Bacteroides fragilis) Explore A0A5C6J4N7 Go to UniProtKB: A0A5C6J4N7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A5C6J4N7
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR-associated protein Cmr3	C	423	Bacteroides fragilis	Mutation(s): 0 Gene Names: NXW39_14645
UniProt
Find proteins for A0A9X9IKM4 (Bacteroides fragilis) Explore A0A9X9IKM4 Go to UniProtKB: A0A9X9IKM4
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UniProt Group	A0A9X9IKM4
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Type III-B CRISPR module RAMP protein Cmr4	D, E, F	279	Bacteroides fragilis	Mutation(s): 1 Gene Names: cmr4, NXW39_14650
UniProt
Find proteins for A0A9X9NER2 (Bacteroides fragilis) Explore A0A9X9NER2 Go to UniProtKB: A0A9X9NER2
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UniProt Group	A0A9X9NER2
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Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR type III-B/RAMP module-associated protein Cmr5	G, H	136	Bacteroides fragilis	Mutation(s): 0 Gene Names: CQW34_02195, F2Z29_06595, F2Z89_11935, F3B44_04880, FSA06_24400, NXW39_14655, NXX45_16700
UniProt
Find proteins for A0A2M9V7H9 (Bacteroides fragilis) Explore A0A2M9V7H9 Go to UniProtKB: A0A2M9V7H9
Entity Groups
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UniProt Group	A0A2M9V7H9
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Reference Sequence

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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
RAMP superfamily protein	I	314	Bacteroides fragilis	Mutation(s): 0 Gene Names: cmr6, CQW34_02194, F2Z89_11940, F3B44_04875, FSA06_24405, NXW39_14660, NXX45_16705
UniProt
Find proteins for A0A2M9V7I0 (Bacteroides fragilis) Explore A0A2M9V7I0 Go to UniProtKB: A0A2M9V7I0
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A2M9V7I0
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 7
NTR	J [auth K]	49	Bacteroides fragilis
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 8
crRNA	K [auth J]	49	Bacteroides fragilis
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Reference Sequence

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP (Subject of Investigation/LOI) Query on ATP Download:Ideal Coordinates CCD File SDF format, chain L [auth B] MOL2 format, chain L [auth B] mmCIF format, chain L [auth B]	L [auth B]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Interactions Focus chain L [auth B] Interactions & Density Focus chain L [auth B]
SAM (Subject of Investigation/LOI) Query on SAM Download:Ideal Coordinates CCD File SDF format, chain M [auth B] MOL2 format, chain M [auth B] mmCIF format, chain M [auth B]	M [auth B]	S-ADENOSYLMETHIONINE C₁₅ H₂₂ N₆ O₅ S MEFKEPWMEQBLKI-FCKMPRQPSA-N		Interactions Focus chain M [auth B] Interactions & Density Focus chain M [auth B]
MN (Subject of Investigation/LOI) Query on MN Download:Ideal Coordinates CCD File SDF format, chain N [auth B] MOL2 format, chain N [auth B] mmCIF format, chain N [auth B]	N [auth B]	MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N		Interactions Focus chain N [auth B] Interactions & Density Focus chain N [auth B]