9L79 | pdb_00009l79

Structure of GPR119-Gs complex bound to AR231453


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.98 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history

Literature

Structure of GPR119-Gs complex bound to AR231453

Sun, Q.He, G.Xu, X.Liu, X.

To be published.

Macromolecule Content 

  • Total Structure Weight: 157.71 kDa 
  • Atom Count: 9,461 
  • Modeled Residue Count: 1,243 
  • Deposited Residue Count: 1,420 
  • Unique protein chains: 6

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Glucose-dependent insulinotropic receptorA [auth R]359Homo sapiensMutation(s): 0 
Gene Names: GPR119
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TDV5 (Homo sapiens)
Explore Q8TDV5 
Go to UniProtKB:  Q8TDV5
PHAROS:  Q8TDV5
GTEx:  ENSG00000147262 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8TDV5
Sequence Annotations
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1351Rattus norvegicusMutation(s): 0 
Gene Names: Gnb1
UniProt
Find proteins for P54311 (Rattus norvegicus)
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Go to UniProtKB:  P54311
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UniProt GroupP54311
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth G]68Bos taurusMutation(s): 0 
Gene Names: GNG2
UniProt
Find proteins for P63212 (Bos taurus)
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UniProt GroupP63212
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(s) subunit alpha isoforms shortD [auth A]245Homo sapiensMutation(s): 5 
Gene Names: GNASGNAS1GSP
EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for P63092 (Homo sapiens)
Explore P63092 
Go to UniProtKB:  P63092
PHAROS:  P63092
GTEx:  ENSG00000087460 
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UniProt GroupP63092
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
scFv16E [auth S]259Mus musculusMutation(s): 0 
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
NB35F [auth N]138Lama glamaMutation(s): 0 

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
8WL
(Subject of Investigation/LOI)

Query on 8WL



Download:Ideal Coordinates CCD File
G [auth R]N-(2-fluoranyl-4-methylsulfonyl-phenyl)-5-nitro-6-[4-(3-propan-2-yl-1,2,4-oxadiazol-5-yl)piperidin-1-yl]pyrimidin-4-amine
C21 H24 F N7 O5 S
DGBKNTVAKIFYNU-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.98 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32122041
National Natural Science Foundation of China (NSFC)China32100968

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-31
    Type: Initial release