9KP4 | pdb_00009kp4

Crystal structure of human CASTOR1 in apo form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.08 Å
  • R-Value Free: 
    0.264 (Depositor), 0.264 (DCC) 
  • R-Value Work: 
    0.225 (Depositor), 0.225 (DCC) 
  • R-Value Observed: 
    0.227 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 9KP4

This is version 1.0 of the entry. See complete history

Literature

CASTOR1 and CASTOR2 respond to different arginine levels to regulate mTORC1 activity.

Liu, C.Zhang, Y.Wang, Y.Wu, M.Li, Y.Wei, J.Shi, J.Wang, R.Su, L.Yang, T.Li, J.Xiao, J.Ding, J.Zhang, T.

(2026) Mol Cell 86: 362-375.e4

  • DOI: https://doi.org/10.1016/j.molcel.2025.12.016
  • Primary Citation Related Structures: 
    9KP4, 9KPB, 9KPG

  • PubMed Abstract: 

    Mechanistic target of rapamycin complex 1 (mTORC1) is a central regulator of cell growth, responding to amino acid availability. While mTORC1 is modulated by amino acid sensors like CASTOR1, the mechanisms driving its dynamic response to fluctuating amino acid levels remain unclear. Here, we investigate the role of CASTOR2, an understudied CASTOR1 homolog, in regulating mTORC1 activity. We show that CASTOR1 and CASTOR2 bind to arginine similarly but differ in their sensitivity: CASTOR1 responds to low arginine levels, whereas CASTOR2 responds to high arginine concentrations. Both proteins interact with the GATOR2 component Mios, inhibiting its binding to GATOR1. Arginine binding to CASTOR1/2 induces conformational changes at the aspartate kinase, chorismate mutase, and TyrA (ACT) domain (ACT2-ACT4) interface, leading to its dissociation from Mios. Functionally, we demonstrate that CASTOR proteins are highly expressed in muscle tissue and, in C2C12 cells, they regulate mTORC1 and myogenesis in response to different arginine availability. These findings highlight how CASTOR proteins function as dual arginine sensors to fine-tune mTORC1 activity.


  • Organizational Affiliation
    • Institute of Geriatrics, Affiliated Nantong Hospital of Shanghai University, The Sixth People's Hospital of Nantong, Shanghai Engineering Research Center of Organ Repair, Joint International Research Laboratory of Biomaterials and Biotechnology in Organ Repair (Ministry of Education), School of Medicine, Shanghai University, Nantong 226011, China.

Macromolecule Content 

  • Total Structure Weight: 309.55 kDa 
  • Atom Count: 18,780 
  • Modeled Residue Count: 2,457 
  • Deposited Residue Count: 2,816 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Maltose/maltodextrin-binding periplasmic protein,Cytosolic arginine sensor for mTORC1 subunit 1
A, B, C, D
704Escherichia coli K-12Homo sapiens
This entity is chimeric
Mutation(s): 0 
Gene Names: malEb4034JW3994CASTOR1GATSL3
UniProt & NIH Common Fund Data Resources
Find proteins for Q8WTX7 (Homo sapiens)
Explore Q8WTX7 
Go to UniProtKB:  Q8WTX7
PHAROS:  Q8WTX7
GTEx:  ENSG00000239282 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8WTX7
Sequence Annotations
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Reference Sequence

Oligosaccharides

Help  
Entity ID: 2
MoleculeChains Length2D Diagram GlycosylationD Interactions
alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranoseE [auth I],
F [auth G],
G [auth H],
H [auth J]
2N/A
Glycosylation Resources
GlyTouCan: G07411ON
GlyCosmos: G07411ON

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ACY

Query on ACY



Download:Ideal Coordinates CCD File
K [auth B],
M [auth C],
O [auth D],
P [auth D],
Q [auth D]
ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
NH4

Query on NH4



Download:Ideal Coordinates CCD File
I [auth A],
J [auth A],
L [auth C],
N [auth D]
AMMONIUM ION
H4 N
QGZKDVFQNNGYKY-UHFFFAOYSA-O

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.08 Å
  • R-Value Free:  0.264 (Depositor), 0.264 (DCC) 
  • R-Value Work:  0.225 (Depositor), 0.225 (DCC) 
  • R-Value Observed: 0.227 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.768α = 90
b = 168.78β = 104.43
c = 98.761γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32070766
National Natural Science Foundation of China (NSFC)China32271247

Revision History  (Full details and data files)

  • Version 1.0: 2026-03-25
    Type: Initial release