9JSX

G175S PMEL CAF amyloid - in vitro polymerized

PDB DOI: https://doi.org/10.2210/pdb9JSX/pdb
EM Map EMD-61786: EMDB EMDataResource

Classification: STRUCTURAL PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2024-10-01 Released: 2024-10-09
Deposition Author(s): Oda, T., Yanagisawa, H.
Funding Organization(s): Japan Society for the Promotion of Science (JSPS), Human Frontier Science Program (HFSP)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 1.79 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM of PMEL Amyloids Reveals Pathogenic Mechanism of G175S in Pigment Dispersion Syndrome.

Yanagisawa, H., Oda, T.

To be published.

Macromolecule Content

Total Structure Weight: 30.29 kDa
Atom Count: 2,144
Modelled Residue Count: 272
Deposited Residue Count: 272
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
M-alpha	A B [auth E] C [auth B] D [auth F] E [auth C] A, B [auth E], C [auth B], D [auth F], E [auth C], F [auth G], G [auth D], H	34	Homo sapiens	Mutation(s): 1 Gene Names: PMEL, D12S53E, PMEL17, SILV
UniProt & NIH Common Fund Data Resources
Find proteins for P40967 (Homo sapiens) Explore P40967 Go to UniProtKB: P40967
PHAROS: P40967 GTEx: ENSG00000185664
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P40967
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 1.79 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-10-09

Deposition Author(s):

Funding Organization	Location	Grant Number
Japan Society for the Promotion of Science (JSPS)	Japan	24H02285
Human Frontier Science Program (HFSP)	France	RGP006/2023

Revision History (Full details and data files)

Version 1.0: 2024-10-09
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.