9JST

Wild-type native PMEL amyloid - polymorph 1

• PDB DOI: https://doi.org/10.2210/pdb9JST/pdb
• EM Map EMD-61782: EMDB EMDataResource

• Classification: STRUCTURAL PROTEIN
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2024-10-01 Released: 2024-10-09 
• Deposition Author(s): Oda, T., Yanagisawa, H.
• Funding Organization(s): Japan Society for the Promotion of Science (JSPS), Human Frontier Science Program (HFSP)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 1.79 Å
• Aggregation State: FILAMENT 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Cryo-EM of PMEL Amyloids Reveals Pathogenic Mechanism of G175S in Pigment Dispersion Syndrome.

Yanagisawa, H., Oda, T.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 8-mer - A8 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 30.75 kDa 
• Atom Count: 2,176 
• Modelled Residue Count: 280 
• Deposited Residue Count: 280 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
M-alpha	A, B, C, D, E, F, G, H	35	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P40967 (Homo sapiens) Explore P40967  Go to UniProtKB:  P40967
PHAROS:  P40967 GTEx:  ENSG00000185664

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 1.79 Å
• Aggregation State: FILAMENT 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-10-09 
Deposition Author(s): Oda, T., Yanagisawa, H.

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Funding Organization	Location	Grant Number
Japan Society for the Promotion of Science (JSPS)	Japan	24H02285
Human Frontier Science Program (HFSP)	France	RGP006/2023

Revision History  

• Version 1.0: 2024-10-09
  Type: Initial release