9JPR | pdb_00009jpr

Local refinement of H11 nanotubes assembled from baculovirus capsid protein

PDB DOI: https://doi.org/10.2210/pdb9JPR/pdb
EM Map EMD-61712: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Schistosoma japonicum, Helicoverpa armigera nucleopolyhedrovirus
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2024-09-26 Released: 2025-10-22
Deposition Author(s): Tian, K., Rao, G., Fu, Y., Cao, S.
Funding Organization(s): Ministry of Science and Technology (MoST, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.80 Å
Aggregation State: HELICAL ARRAY
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Local refinement of H11 nanotubes assembled from baculovirus capsid protein

Tian, K., Rao, G., Fu, Y., Cao, S.

To be published.

Macromolecule Content

Total Structure Weight: 484.2 kDa
Atom Count: 17,424
Modeled Residue Count: 2,160
Deposited Residue Count: 4,232
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase class-mu 26 kDa isozyme,Viral capsid 39 protein	A, B, C, D, E A, B, C, D, E, F, G, H	529	Schistosoma japonicum, Helicoverpa armigera nucleopolyhedrovirus This entity is chimeric	Mutation(s): 0 EC: 2.5.1.18
UniProt
Find proteins for P08515 (Schistosoma japonicum) Explore P08515 Go to UniProtKB: P08515
Find proteins for Q77K63 (Helicoverpa armigera nucleopolyhedrovirus) Explore Q77K63 Go to UniProtKB: Q77K63
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P08515Q77K63
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.80 Å
Aggregation State: HELICAL ARRAY
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-10-22

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	2022YFC2303300

Revision History (Full details and data files)

Version 1.0: 2025-10-22
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.