9IJD

Carazolol-activated human beta3 adrenergic receptor


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.76 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Molecular Mechanism of the beta 3AR Agonist Activity of a beta-Blocker.

Zheng, S.Zhang, S.Dai, S.Chen, K.Gao, K.Sun, X.Lin, B.Liu, X.

(2024) Chempluschem : e202400288-e202400288

  • DOI: https://doi.org/10.1002/cplu.202400288
  • Primary Citation of Related Structures:  
    9IJD, 9IJE

  • PubMed Abstract: 

    Development of subtype-selective drugs for G protein-coupled receptors poses a significant challenge due to high similarity between subtypes, as exemplified by the three β-adrenergic receptors (βARs). The β3AR agonists show promise for treating the overactive bladder or preterm birth, but their potential is hindered by off-target activation of β1AR and β2AR. Interestingly, several β-blockers, which are antagonists of the β1ARs and β2ARs, have been reported to exhibit agonist activity at the β3AR. However, the molecular mechanism remains elusive. Understanding the underlying mechanism should facilitate the development of β3AR agonist drugs with improved selectivity and reduced off-target effects. In this work, we determined the structures of human β3AR in complex with the endogenous agonist epinephrine or with a synthetic β3AR agonist carazolol, which is also a high-affinity β-blocker. Structure comparison, mutagenesis studies and molecular dynamics simulations revealed that the differences on the flexibility of D3.32 directly contribute to carazolol's distinct activities as an antagonist for the β2AR and an agonist for the β3AR. The process is also indirectly influenced by the extracellular loops (ECL), especially ECL1. Taken together, these results provide key guidance for development of selective β3AR agonists, paving the way for new therapeutic opportunities.


  • Organizational Affiliation

    Tsinghua University, School of Pharmaceutical Sciences, CHINA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1A [auth B]340Rattus norvegicusMutation(s): 0 
Gene Names: Gnb1
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UniProt GroupP54311
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Camelid antibody VHH fragmentB [auth N]128Lama glamaMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Single-chain Fv16C [auth D]246Homo sapiensMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-3 adrenergic receptorD [auth R]321Homo sapiensMutation(s): 0 
Gene Names: ADRB3ADRB3RB3AR
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P13945 (Homo sapiens)
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PHAROS:  P13945
GTEx:  ENSG00000188778 
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UniProt GroupP13945
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(s) subunit alpha isoforms shortE [auth A]373Bos taurusMutation(s): 0 
Gene Names: GNASGNAS1
Membrane Entity: Yes 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2F [auth C]52Bos taurusMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CAU (Subject of Investigation/LOI)
Query on CAU

Download Ideal Coordinates CCD File 
G [auth R](2S)-1-(9H-Carbazol-4-yloxy)-3-(isopropylamino)propan-2-ol
C18 H22 N2 O2
BQXQGZPYHWWCEB-ZDUSSCGKSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.76 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32122041

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-21
    Type: Initial release