9HPP | pdb_00009hpp

Helical form of Citropin 1.3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 
    0.323 (Depositor), 0.329 (DCC) 
  • R-Value Work: 
    0.284 (Depositor), 0.288 (DCC) 
  • R-Value Observed: 
    0.288 (Depositor) 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural and Functional Versatility of the Amyloidogenic Non-Amidated Variant of the Antimicrobial Peptide Citropin 1.3.

Strati, F.Cali, M.P.Bloch, Y.Mostafavi, S.Monistrol, J.Golubev, A.Rayan, B.Gustavsson, E.Landau, M.

(2025) Adv Sci (Weinh) 12: e03997-e03997

  • DOI: https://doi.org/10.1002/advs.202503997
  • Primary Citation of Related Structures:  
    9HPP

  • PubMed Abstract: 

    Citropin 1.3 is an antimicrobial peptide secreted by the amphibian Litoria citropa (Southern bell frog). In this study, the structural and functional properties of its non-amidated form, which self-assembles into distinct fibrillar architectures, are investigated. Using cryogenic electron microscopy, X-ray crystallography, and fluorescence microscopy with model membranes and cells, diverse supramolecular structures, including canonical amyloid fibrils, multilayered nanotubes, and a novel mixed fibril type, are identified. In giant unilamellar vesicles, citropin 1.3 promoted membrane fusion and underwent lipid-induced phase separation. In mammalian cells, it permeabilized membranes, induced cell death, and colocalized with nucleic acids. These findings link antimicrobial activity to amyloid assembly and highlight the peptide's structural plasticity and potential biological functions, offering new insights into amyloid-based antimicrobial mechanisms.


  • Organizational Affiliation
    • CSSB Centre for Structural Systems Biology, Deutsches Elektronen-Synchrotron DESY, 22603, Hamburg, Germany.

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Citropin-1.3
A, B
16Ranoidea citropaMutation(s): 0 
UniProt
Find proteins for P81846 (Ranoidea citropa)
Explore P81846 
Go to UniProtKB:  P81846
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP81846
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free:  0.323 (Depositor), 0.329 (DCC) 
  • R-Value Work:  0.284 (Depositor), 0.288 (DCC) 
  • R-Value Observed: 0.288 (Depositor) 
Space Group: P 41 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 67.83α = 90
b = 67.83β = 90
c = 67.83γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
H2020 Marie Curie Actions of the European CommissionEuropean Union945405
Israel Science FoundationIsrael2111/20

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-08
    Type: Initial release
  • Version 1.1: 2025-12-24
    Changes: Database references