9H9P | pdb_00009h9p

Spokes 12 and 13 of the human gamma-tubulin ring complex in complex with CDK5RAP2 and docked MZT2/GCP2-NHD module


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9H9P

This is version 1.0 of the entry. See complete history

Literature

Structural insights into the interplay between microtubule polymerases, gamma-tubulin complexes and their receptors.

Zheng, A.Vermeulen, B.J.A.Wurtz, M.Neuner, A.Lubbehusen, N.Mayer, M.P.Schiebel, E.Pfeffer, S.

(2025) Nat Commun 16: 402-402

  • DOI: https://doi.org/10.1038/s41467-024-55778-7
  • Primary Citation Related Structures: 
    9H9P, 9H9Q, 9H9R

  • PubMed Abstract: 

    The γ-tubulin ring complex (γ-TuRC) is a structural template for controlled nucleation of microtubules from α/β-tubulin heterodimers. At the cytoplasmic side of the yeast spindle pole body, the CM1-containing receptor protein Spc72 promotes γ-TuRC assembly from seven γ-tubulin small complexes (γ-TuSCs) and recruits the microtubule polymerase Stu2, yet their molecular interplay remains unclear. Here, we determine the cryo-EM structure of the Candida albicans cytoplasmic nucleation unit at 3.6 Å resolution, revealing how the γ-TuRC is assembled and conformationally primed for microtubule nucleation by the dimerised Spc72 CM1 motif. Two coiled-coil regions of Spc72 interact with the conserved C-terminal α-helix of Stu2 and thereby position the α/β-tubulin-binding TOG domains of Stu2 in the vicinity of the microtubule assembly site. Collectively, we reveal the function of CM1 motifs in γ-TuSC oligomerisation and the recruitment of microtubule polymerases to the γ-TuRC.


  • Organizational Affiliation
    • Zentrum für Molekulare Biologie der Universität Heidelberg (ZMBH), Heidelberg, Germany.

Macromolecule Content 

  • Total Structure Weight: 856.97 kDa 
  • Atom Count: 16,352 
  • Modeled Residue Count: 2,016 
  • Deposited Residue Count: 7,595 
  • Unique protein chains: 5

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
CDK5 regulatory subunit-associated protein 2A,
B [auth G]
1,893Homo sapiensMutation(s): 2 
Gene Names: CDK5RAP2CEP215KIAA1633
UniProt & NIH Common Fund Data Resources
Find proteins for Q96SN8 (Homo sapiens)
Explore Q96SN8 
Go to UniProtKB:  Q96SN8
PHAROS:  Q96SN8
GTEx:  ENSG00000136861 
Entity Groups
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UniProt GroupQ96SN8
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Gamma-tubulin complex component 6C [auth L]1,819Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q96RT7 (Homo sapiens)
Explore Q96RT7 
Go to UniProtKB:  Q96RT7
PHAROS:  Q96RT7
GTEx:  ENSG00000128159 
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UniProt GroupQ96RT7
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Isoform 3 of Gamma-tubulin complex component 2D [auth M]930Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BSJ2 (Homo sapiens)
Explore Q9BSJ2 
Go to UniProtKB:  Q9BSJ2
PHAROS:  Q9BSJ2
GTEx:  ENSG00000130640 
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UniProt GroupQ9BSJ2
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Tubulin gamma-1 chainE [auth l],
F [auth m]
451Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P23258 (Homo sapiens)
Explore P23258 
Go to UniProtKB:  P23258
PHAROS:  P23258
GTEx:  ENSG00000131462 
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UniProt GroupP23258
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Mitotic-spindle organizing protein 2AG [auth C]158Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q6P582 (Homo sapiens)
Explore Q6P582 
Go to UniProtKB:  Q6P582
PHAROS:  Q6P582
GTEx:  ENSG00000173272 
Entity Groups
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UniProt GroupQ6P582
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanySchi 295/4-4
German Research Foundation (DFG)GermanyPF 963/1-4
German Research Foundation (DFG)GermanyPF 963/4-1
Other private--
German Research Foundation (DFG)GermanyINST 35/1314-1 FUGG
German Research Foundation (DFG)GermanyINST 35/1134-1 FUGG

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-15
    Type: Initial release