9H9Q | pdb_00009h9q

Candida albicans gamma-tubulin small complex within ring-like higher oligomer in complex with Spc72 CM1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9H9Q

This is version 1.0 of the entry. See complete history

Literature

Structural insights into the interplay between microtubule polymerases, gamma-tubulin complexes and their receptors.

Zheng, A.Vermeulen, B.J.A.Wurtz, M.Neuner, A.Lubbehusen, N.Mayer, M.P.Schiebel, E.Pfeffer, S.

(2025) Nat Commun 16: 402-402

  • DOI: https://doi.org/10.1038/s41467-024-55778-7
  • Primary Citation Related Structures: 
    9H9P, 9H9Q, 9H9R

  • PubMed Abstract: 

    The γ-tubulin ring complex (γ-TuRC) is a structural template for controlled nucleation of microtubules from α/β-tubulin heterodimers. At the cytoplasmic side of the yeast spindle pole body, the CM1-containing receptor protein Spc72 promotes γ-TuRC assembly from seven γ-tubulin small complexes (γ-TuSCs) and recruits the microtubule polymerase Stu2, yet their molecular interplay remains unclear. Here, we determine the cryo-EM structure of the Candida albicans cytoplasmic nucleation unit at 3.6 Å resolution, revealing how the γ-TuRC is assembled and conformationally primed for microtubule nucleation by the dimerised Spc72 CM1 motif. Two coiled-coil regions of Spc72 interact with the conserved C-terminal α-helix of Stu2 and thereby position the α/β-tubulin-binding TOG domains of Stu2 in the vicinity of the microtubule assembly site. Collectively, we reveal the function of CM1 motifs in γ-TuSC oligomerisation and the recruitment of microtubule polymerases to the γ-TuRC.


  • Organizational Affiliation
    • Zentrum für Molekulare Biologie der Universität Heidelberg (ZMBH), Heidelberg, Germany.

Macromolecule Content 

  • Total Structure Weight: 907.43 kDa 
  • Atom Count: 36,618 
  • Modeled Residue Count: 4,486 
  • Deposited Residue Count: 7,864 
  • Unique protein chains: 4

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Tubulin gamma chain
A, B, G, I
498Candida albicansMutation(s): 0 
Gene Names: FOB64_001277
UniProt
Find proteins for A0A1D8PMD4 (Candida albicans (strain SC5314 / ATCC MYA-2876))
Explore A0A1D8PMD4 
Go to UniProtKB:  A0A1D8PMD4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1D8PMD4
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Spindle pole body component
C, J
896Candida albicansMutation(s): 0 
Gene Names: CAALFM_CR06740WAorf19.8327
UniProt
Find proteins for Q59PZ2 (Candida albicans (strain SC5314 / ATCC MYA-2876))
Explore Q59PZ2 
Go to UniProtKB:  Q59PZ2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ59PZ2
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Spc98p
D, H
810Candida albicansMutation(s): 0 
Gene Names: SPC98CAALFM_CR01990CAorf19.10131
UniProt
Find proteins for A0A1D8PS42 (Candida albicans (strain SC5314 / ATCC MYA-2876))
Explore A0A1D8PS42 
Go to UniProtKB:  A0A1D8PS42
Entity Groups
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UniProt GroupA0A1D8PS42
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Mto2p-binding domain-containing protein
E, F, K, L
615Candida albicansMutation(s): 0 
Gene Names: CAALFM_C701460CAorf19.13936
UniProt
Find proteins for Q5AGV5 (Candida albicans (strain SC5314 / ATCC MYA-2876))
Explore Q5AGV5 
Go to UniProtKB:  Q5AGV5
Entity Groups
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UniProt GroupQ5AGV5
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanySchi 295/4-4
German Research Foundation (DFG)GermanyPF 963/1-4
German Research Foundation (DFG)GermanyPF 963/4-1
Other private--
German Research Foundation (DFG)GermanyINST 35/1314-1 FUGG
German Research Foundation (DFG)GermanyINST 35/1134-1 FUGG

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-15
    Type: Initial release