9EYJ

Cryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to cA4

PDB DOI: https://doi.org/10.2210/pdb9EYJ/pdb
EM Map EMD-50055: EMDB EMDataResource
NAKB: 9EYJ

Classification: HYDROLASE
Organism(s): Candidatus Cloacimonas acidaminovorans, synthetic construct
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-04-09 Released: 2024-10-02
Deposition Author(s): Tamulaitiene, G., Sasnauskas, G., Smalakyte, D., Tamulaitis, G.
Funding Organization(s): Research Council of Lithuania

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of SAVED-Lon protease CCaCalpL filament bound to cA4

Smalakyte, D., Ruksenaite, A., Sasnauskas, G., Tamulaitiene, G., Tamulaitis, G.

To be published.

Macromolecule Content

Total Structure Weight: 127.86 kDa
Atom Count: 4,334
Modelled Residue Count: 580
Deposited Residue Count: 1,102
Unique protein chains: 1
Unique nucleic acid chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SMODS-associated and fused to various effectors domain-containing protein	A, B	549	Candidatus Cloacimonas acidaminovorans	Mutation(s): 0 Gene Names: CLOAM0848
UniProt
Find proteins for B0VHB4 (Cloacimonas acidaminovorans (strain Evry)) Explore B0VHB4 Go to UniProtKB: B0VHB4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B0VHB4
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Length	Organism	Image
cA4	C [auth D]	4	synthetic construct
Sequence Annotations Expand
Reference Sequence

Biologically Interesting Molecules (External Reference) 1 Unique

Entity ID: 2
ID	Chains	Name	Type/Class	2D Diagram	3D Interactions
PRD_002431 Query on PRD_002431	C [auth D]	Cyclic tetraadenosine monophosphate (cA4)	Polycyclic / Antiviral		Interactions Focus chain C [auth D] Interactions & Density Focus chain C [auth D]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	v4.4.1

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-10-02

Deposition Author(s):

Tamulaitiene, G.

Funding Organization	Location	Grant Number
Research Council of Lithuania	Lithuania	S-MIP-22-9

Revision History (Full details and data files)

Version 1.0: 2024-10-02
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.