9EQ7

Halobacterium salinarum archaellum filament


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.23 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Perturbed N-glycosylation of Halobacterium salinarum archaellum filaments leads to filament bundling and compromised cell motility.

Sofer, S.Vershinin, Z.Mashni, L.Zalk, R.Shahar, A.Eichler, J.Grossman-Haham, I.

(2024) Nat Commun 15: 5841-5841

  • DOI: https://doi.org/10.1038/s41467-024-50277-1
  • Primary Citation of Related Structures:  
    9EQ7, 9ESM, 9ETU

  • PubMed Abstract: 

    The swimming device of archaea-the archaellum-presents asparagine (N)-linked glycans. While N-glycosylation serves numerous roles in archaea, including enabling their survival in extreme environments, how this post-translational modification contributes to cell motility remains under-explored. Here, we report the cryo-EM structure of archaellum filaments from the haloarchaeon Halobacterium salinarum, where archaellins, the building blocks of the archaellum, are N-glycosylated, and the N-glycosylation pathway is well-resolved. We further determined structures of archaellum filaments from two N-glycosylation mutant strains that generate truncated glycans and analyzed their motility. While cells from the parent strain exhibited unidirectional motility, the N-glycosylation mutant strain cells swam in ever-changing directions within a limited area. Although these mutant strain cells presented archaellum filaments that were highly similar in architecture to those of the parent strain, N-linked glycan truncation greatly affected interactions between archaellum filaments, leading to dramatic clustering of both isolated and cell-attached filaments. We propose that the N-linked tetrasaccharides decorating archaellins act as physical spacers that minimize the archaellum filament aggregation that limits cell motility.


  • Organizational Affiliation

    Department of Life Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Archaellin
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z
193Halobacterium salinarumMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Glycosylation
Glycosylation Sites: 2
Sequence Annotations
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
2-O-sulfo-beta-D-glucopyranuronic acid-(1-4)-3-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-beta-D-glucopyranuronic acid-(1-4)-beta-D-glucopyranose
AA [auth a],
AB [auth 0],
BA [auth b],
BB [auth 1],
CA [auth c],
AA [auth a],
AB [auth 0],
BA [auth b],
BB [auth 1],
CA [auth c],
CB [auth 2],
DA [auth d],
DB [auth 3],
EA [auth e],
EB [auth 4],
FA [auth f],
FB [auth 5],
GA [auth g],
GB [auth 6],
HA [auth h],
HB [auth 7],
IA [auth i],
IB [auth 8],
JA [auth j],
JB [auth 9],
KA [auth k],
KB [auth AA],
LA [auth l],
LB [auth BA],
MA [auth m],
MB [auth CA],
NA [auth n],
NB [auth DA],
OA [auth o],
OB [auth EA],
PA [auth p],
PB [auth FA],
QA [auth q],
QB [auth GA],
RA [auth r],
RB [auth HA],
SA [auth s],
SB [auth IA],
TA [auth t],
TB [auth JA],
UA [auth u],
UB [auth KA],
VA [auth v],
VB [auth LA],
WA [auth w],
WB [auth MA],
XA [auth x],
XB [auth NA],
YA [auth y],
YB [auth OA],
ZA [auth z],
ZB [auth PA]
4N/AN-Glycosylation
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.23 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21rc1_4985:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-17
    Type: Initial release
  • Version 1.1: 2024-07-24
    Changes: Data collection, Database references